Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1635 ATGATGTCTGAAGAAGCCTTTTCTGCTCCTTCCAACATCAGAGGCACCTTGGTTGATCCAAACTCAAACTCAAACCCTAATCCTAACCCTAATAACTCAAACCCAGTAGTCAAGAGAAAGAGAAGCCTACCAGGAACACCAGATCCAGATGCAGAAGTGATAGCTCTTTCGCCGAAGTCACTGATGGCAACCAACCGTTTCATCTGCGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCGTGGAAGCTGAAGCAGAGGACGAGCCAAGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGCTGCGTGCACAACGACCCTTCCAGGGCACTTGGAGACCTCACGGGGATAAAGAAACACTACAGCAGGAAGCACGGTGAGAAGAAATGGAAGTGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCTGACTGTAAGGCCCATACCAAGATTTGTGGGACTAGAGAGTACAGATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCACCGAGCCTTCTGTGAAGCCTTAGCGGAGCAAAGTGCGAGAATGATGACTTCAGTTCCGGCGGTCTTATCTAACTTGAGAAACGATCATCATTTGATCAACGCTCAAACACCGAGAATAATGCCTCATCATCAGAGTTTACTGGGGTTTCAACATGAATTTGGTGGGTCCGTGGCTGAACCATTAATGGGGAATCTCGCAGATGCAGACCATGGAGGACAACAGAAGCTGAAGCTACCTCTTTGGCTAGACCAAGCAAATAATTCAAGTGTTGTCACCGCCATGCCTGATTTGGTCCAAACAATGAACATGTTCGGGTCGCCATCGTCGTCACAGGTGCCATGGCTGATGAATTATCGATATTCATCGGAAGCAGCATCATCATCATTTACAAGTGACAATAATATTAATCTATCTTGTAATGTGCCGGCAATGCCGCTAGGAGTGATGAAGAGGGAGCAAGAAGAGAACAAAGGAGAATTGTTGTTGTCGCACAGCGTGATGAGTAGTTCTTTGTACTCAAGTTGTCAGAGCCAGCAAGGAGGGTCATCTCATCACATGTCAGCCACTGCCTTGTTGCAGAAAGCAACCCAAATGGAATCTACGAGGATCAATGATGATAATGTTGCTGCAGCACCAACATTCAACAACAACAACAATGATATTGTGGAGATTCAGAAGATTTTCAAGCAAACTAATCAAACCGAGAACTTCAATAATGAGATGGTGAGTTGCCAAGCAAATATTGGAGGTGGGTTTTCATTAAACTTGAGCTCGCCGTTTGTGATTGAAGATCAGTGGCAAGATCGACAACCACCGATTTTGGGCAAGCAACCACATTCACGTTCAAATATTGATGATGAAGACCAGTTTGGCTTAACAAGAGACTTCCTTGGCGTTGGAGATGACTCTTTAAGCAGACCCTTCTTGCAGCAAGAGCTCGCCAAGTTCGATTCAGTGGGATCGGTCATGAACCTTCAAAGCCATTTCGGGGGACACAACTGA 1566 0.4681 MMSEEAFSAPSNIRGTLVDPNSNSNPNPNPNNSNPVVKRKRSLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSQEVVRKKVYVCPEKSCVHNDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDCKAHTKICGTREYRCDCGTLFSRKDSFITHRAFCEALAEQSARMMTSVPAVLSNLRNDHHLINAQTPRIMPHHQSLLGFQHEFGGSVAEPLMGNLADADHGGQQKLKLPLWLDQANNSSVVTAMPDLVQTMNMFGSPSSSQVPWLMNYRYSSEAASSSFTSDNNINLSCNVPAMPLGVMKREQEENKGELLLSHSVMSSSLYSSCQSQQGGSSHHMSATALLQKATQMESTRINDDNVAAAPTFNNNNNDIVEIQKIFKQTNQTENFNNEMVSCQANIGGGFSLNLSSPFVIEDQWQDRQPPILGKQPHSRSNIDDEDQFGLTRDFLGVGDDSLSRPFLQQELAKFDSVGSVMNLQSHFGGHN* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1635 521 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 22 500 - -
Dod10g1635 521 MobiDBLite consensus disorder prediction 1 51 - -
Dod10g1635 521 SMART c2h2final6 144 164 IPR013087 -
Dod10g1635 521 SMART c2h2final6 67 89 IPR013087 -
Dod10g1635 521 SMART c2h2final6 109 139 IPR013087 -
Dod10g1635 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 500 - -
Dod10g1635 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Dod10g1635 521 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Dod10g1635 521 Gene3D Classic Zinc Finger 46 120 - -
Dod10g1635 521 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Dod10g1635 521 MobiDBLite consensus disorder prediction 1 39 - -
Dod10g1635 521 Gene3D Classic Zinc Finger 121 202 - -
Dod10g1635 521 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1635 Dod-Chr10 37275181 37278477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1635 37 208 IDZ Gene Family AT3G45260 84.302 1.72e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1635 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1635 K25870 - gmx:100817691 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1635 10 37275181 37278477 Dod03g2819 03 60052873 60055859 PCT