Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1624 ATGAGTACCGAGGAAGCACATGATGCAGCTTCTTGCAAACGAACAGTTTCACTTCCAGTTCACGCGGTTGATGAAGATCCAATGGGGTTCCTGAATGAAGAAACCTCACATGTTGATTGGAAGAGACAGAATATTTTCCTGGATATACCATCATCACAAGAGCCATCTCAGGATTTTGTTGCAATAAAGATGCCACTGACACCAAGTCCAACTCCAACACACAAGAGAGTGAATTTCCTTGTGACTTCTCGCTCTGTTGATGCTCCCATTAGTAGTACTAGTTCTCCTGGTTCTGGGCCTTCAGCACCAAGAGGCAAATCATCCATAAGAAACATCTTGCCAAAATTGAATCTAAGGCATAGGGCATCATCAGATGTTGAAAAGGCTGCTCCTGCAGCACCAGAAGGTTCCTCATCAGGCCATCAGGAGAAGTCTTCAATCTCAAGATCAGTGTCCCTGACTAAGATATTTACTACCAAGATTAAGAGAACGTCATCATTGCCAGTAGAAGAACTTGGACATGTAAACACAGATTATGCTTATGGTGGAAGTATTGCTGGGTCCCCATTTAGAAAAGAAAACCAGGGGACCATAGCTCGCTCTCGTTCAGTACCTGTCAATACCAAAGAAAAAGGCATAAGGAGTATGGATTCATTTTTCCGCATCATTCCTTCCACTCCTCAAGTGAAGGAAGGGAGTGATTGGTTGACCAAGTACAAGCCAAAGGATACTGAAAACGATGAAGCTGACGGTGAAGATATAGCTGAAGAAGAAGCTGTGTGTAGAATTTGTCTGGTAGAACTATGTGAAGGAGGCGAGACATTTAAGATGGAATGCAGCTGCAAAGGTGCACTTGCTCTGGCTCACAAAGATTGTGCTATTAAATGGTTTACAATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTCCAGAACCTACCCGTCACTCTCTTGCGGATCCGAAGTGTTCGAACTCAGAATGCTGGAGCAACGTCTCATCAGGAAGATGATTACAGGGTTTGGCAGGAACTGCCAGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGGGAAATGGGAAACAATGCAATTTCCATATCTCTTCCATTTTCCTGTGTACTTGGTCTAGTCTCCTCCGTGACATCATCAACCATGGTGAAGAGCAAGTTCGTCTGGCTTTATGCCTCTGTCCAATTAGCTCTGGTGGTCCTCTTCGCACACATATTTTACTCCCTGGTAAATGATTCTGATTGA 1284 0.4424 MSTEEAHDAASCKRTVSLPVHAVDEDPMGFLNEETSHVDWKRQNIFLDIPSSQEPSQDFVAIKMPLTPSPTPTHKRVNFLVTSRSVDAPISSTSSPGSGPSAPRGKSSIRNILPKLNLRHRASSDVEKAAPAAPEGSSSGHQEKSSISRSVSLTKIFTTKIKRTSSLPVEELGHVNTDYAYGGSIAGSPFRKENQGTIARSRSVPVNTKEKGIRSMDSFFRIIPSTPQVKEGSDWLTKYKPKDTENDEADGEDIAEEEAVCRICLVELCEGGETFKMECSCKGALALAHKDCAIKWFTIKGNKTCDVCKEEVQNLPVTLLRIRSVRTQNAGATSHQEDDYRVWQELPVLVIVSMLAYFCFLEQLLVGEMGNNAISISLPFSCVLGLVSSVTSSTMVKSKFVWLYASVQLALVVLFAHIFYSLVNDSD* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1624 427 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Dod10g1624 427 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Dod10g1624 427 MobiDBLite consensus disorder prediction 87 105 - -
Dod10g1624 427 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 32 424 - -
Dod10g1624 427 SUPERFAMILY RING/U-box 257 312 - -
Dod10g1624 427 MobiDBLite consensus disorder prediction 87 108 - -
Dod10g1624 427 MobiDBLite consensus disorder prediction 121 148 - -
Dod10g1624 427 SMART ringv_2 260 309 IPR011016 GO:0008270
Dod10g1624 427 CDD RING_CH-C4HC3_MARCH 261 309 - -
Dod10g1624 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 316 IPR013083 -
Dod10g1624 427 PANTHER OS02G0165000 PROTEIN 32 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1624 Dod-Chr10 37154777 37159268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1624 258 315 C3H Transcription Factor Family AT2G37950 45.763 1.89e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1624 - - gmx:100815566 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1624 10 37154777 37159268 Dod10g1624 10 37154777 37159268 ECH
Dod10g1624 10 37154777 37159268 Dod03g2806 03 59895473 59900631 PCT