Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1607 ATGAAGGAAGCTGAGAAGAGCTTGGATCCGCAGCTATGGCACGCGTGCGCCGGTGGCATGGTTCAGATGCCTCCGGTGAGCTCAAAAGTGTTCTACTTTCCACAAGGGCATGCCGAGCACACACAAACGAACGTTGATATCGGTGCTCCCCCGAGGATTCCACCACTCATCCTCTGCCGCGTGGCAGGGGTGAAGTACCTTGCCGACCCTGAATCGGATGAAGTCTTTGCAAGGATAAGGTTGGTTCCTTTGAGCAATTCAGAGCTCGAATTTGATGATTGTGGTGCCCTTGATGTCAATGCTTCGGAGAATTCGGAAAAGCCTGCATCTTTTGCAAAGACCTTAACTCAATCCGATGCAAACAATGGTGGGGGGTTCTCTGTTCCGAGGTACTGTGCTGAAACCATCTTCCCCCGGCTCGATTACTCGGCCGAGCCGCCGGTTCAGACGGTTATAGCCAAGGATGTTCATGGTGAAGTTTGGAAGTTTAGGCATATTTATAGGGGCACTCCGAGGAGGCACTTGTTAACAACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCGGGGGATTCTATTGTGTTCCTGAGGGCTGAAAATGGTGATCTTTGTGTTGGGATCAGGCGTGCCAAGAGAGGAATCGGTGGCGGATCGGAGGCGCCATCAGGGTGGAGCTCTGGCAATGGAAGTGGTAGTTGTGGTGTTGGGCCTTATGGGGCATTCTCTGCATTCTTGAGAGAGGAGAGTAAGATTTTGAGGAATGCTTGTGGTGGGAATTCAAGTCCTTGTGGTGGTGGTTTGAGTGGGAAGGGAAGAGTGAGTCCTGAATCTGTGAGGGAGGCTATGGCACTTGCTGCTAGACACCAGCCATTTGAAGTTGTTTATTTTCCGCGGGCGAGCACACCTGAGTTTTGCATCAAAGCTTCGGCAGTCAGGGGGGCCATGAGAATTCAATGGAGCTCCGGGATGAGGTTTAAGATGGCCTTTGAGACTGAAGATTCTTCCAGGATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTGATTCCCCTTGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAATTGGTAGCAAACATGCCAGTGATCAATCTCACACCATTCTCTCCACCGAGGAAGAAGCTCCGGTTTCCACAACACCCGGACTTTCCCCTCGATGTTCAATTTCCATTACCATCGTTTTCAGGCAACCCCCTCGGGCCTAGCAGCCCCTTGTGTTGTCCATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCGGATCTCTACCTTCACAACAATAAACTGCAGTTGGGGGTGCTTCAGCCTAGCGTCCAGCAGTTCAATTTGCGTACTGCGATCCCTAATCGTAACATCATGGCCAACCATGATAAGAGCAAAGAAAGCTTGTCATGCTTGCTGACCATGGGAAATTCTCACAAGAGTTTGGAGAAATCTGATAATGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTAGAAGGCATTCTGATGATGTGTTGTCTCAGAATTGTACCGGGAAAAGTAACTCACTAGATGAGAATAAGGACAAAGAGAAGTGGTTCTTCAGTGACTCCCAATCCACACTTTCACAGCAGTTTTCACCTGGAAAATCTTCTAGCACTGAGTTATCTTGGCAACTTGGCTTGGATACCGGTCATTGCAAGGTGTTCATGGAGTCAGAAGATGTTGGAAGGACCCTAGACCTGTCACATCTTGGTTCCTATGAAGAGCTGTATAGGAGACTGGCCAACATGTTTGGAATAGAAAGATCTGAGATGTTGAGTCATGTACTCTACCGTGATGCAACTGGTGCTGTTAAGCAAACTGGGGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGGCTGATCCAGGCAGCAAAGATACTAGAAGGGCCTGGGTTACAGGAACTAGGAATGGTGAACATGGATTGGATGCATCAAATAAGACCGGCCCTCTTAGCATATTTGCTTAA 2142 0.4855 MKEAEKSLDPQLWHACAGGMVQMPPVSSKVFYFPQGHAEHTQTNVDIGAPPRIPPLILCRVAGVKYLADPESDEVFARIRLVPLSNSELEFDDCGALDVNASENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGSEAPSGWSSGNGSGSCGVGPYGAFSAFLREESKILRNACGGNSSPCGGGLSGKGRVSPESVREAMALAARHQPFEVVYFPRASTPEFCIKASAVRGAMRIQWSSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPDSPWRLLQVTWDEPDLLHNVKRVSPWLVELVANMPVINLTPFSPPRKKLRFPQHPDFPLDVQFPLPSFSGNPLGPSSPLCCPSDNAPAGIQGARHAQIGISLSDLYLHNNKLQLGVLQPSVQQFNLRTAIPNRNIMANHDKSKESLSCLLTMGNSHKSLEKSDNVKRHQFLLFGQPILTEQQISRRHSDDVLSQNCTGKSNSLDENKDKEKWFFSDSQSTLSQQFSPGKSSSTELSWQLGLDTGHCKVFMESEDVGRTLDLSHLGSYEELYRRLANMFGIERSEMLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILADPGSKDTRRAWVTGTRNGEHGLDASNKTGPLSIFA* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1607 713 Gene3D - 600 684 - -
Dod10g1607 713 ProSiteProfiles PB1 domain profile. 601 681 IPR000270 GO:0005515
Dod10g1607 713 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod10g1607 713 SUPERFAMILY DNA-binding pseudobarrel domain 105 216 IPR015300 -
Dod10g1607 713 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod10g1607 713 Gene3D - 320 393 - -
Dod10g1607 713 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Dod10g1607 713 SMART B3_2 111 213 IPR003340 GO:0003677
Dod10g1607 713 CDD B3_DNA 110 211 IPR003340 GO:0003677
Dod10g1607 713 Gene3D - 109 213 IPR015300 -
Dod10g1607 713 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Dod10g1607 713 PANTHER AUXIN RESPONSE FACTOR 2 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1607 Dod-Chr10 37011174 37015247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1607 4 683 B3 DNA Binding Superfamily AT4G30080 60.549 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod10g1607 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1607 - - gmx:100778135 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1607 10 37011174 37015247 Dod10g1607 10 37011174 37015247 ECH
Dod10g1607 10 37011174 37015247 Dod03g2787 03 59716784 59719986 ECH
Dod10g1607 10 37011174 37015247 Dod03g2787 03 59716784 59719986 PCT