Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1605 ATGTCTGAGGATGTTGGTAAAATGAAGGACTCTTGGTTCTTTGACAAGAATTTTAATGGCCTGCCCGATGAGGCTTTCGATGATGTTGTCAATTTTTTCGATTTCCCATTGGAAGATGTGGAACCTAATGCTGTGGATGAAGATTGGGATGCTCAATTGAAACGCCTTGAAGAGCCATGTTTTGATGTTTTTTCAGTGTCATCAACTGGGCTGTGTGCCAAAGCACAAGATGAAAAGCCACAACTTGGGAGGAGTTTCTCTGCTTCTTGTAACAAGGTGTCCCCAATAAAACAGCTGGCACAGACTGCTGGACTGACATATGGGAAAACCATTCCCAACCAGAATTTATCTTTCAATGGGAAAGATTTGCATCAATACCGAACCTACAGTCCAGTTTCTGTTTTTGAAAGCAGCAGTTCTTCCTCAGCTGAGAATTCCAACCATGATCTACCTCCCATCCCGGTAAAGCGTGCTCGGAGTAGGCGCCAGCGTCCTTCAAACTTCAGTCCTCCATTCTCGGTTCCTTTCATCCTTACTTCACCAGCTTTGCAAAATTGTCAAAGGACAGCTGCCTCTAAATCAGATTTAGGATCATGCCTTGCTGCAAAATCATTATACCAAGCAAAAAAACAAAGGAAAAAGGACCTGTCCATGCTAGCAGGTCATGTTGAGATGAAAAGATCCTCATCGCAGGAGTCAATTCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCAAAGACCCTGTGCAATGCTTGTGGTGTTCGATACAGGTCTGGCCGCCTCTTTCCGGAGTACCGTCCTGCAGCTAGCCCCACTTTTGTACCATCATTGCACTCAAACTCTCACAAGAAGGTCGTAGAGATGAGAAGCAGAGGCATTCAGCAGGCTGTTGGGGGTTCTTTGTCGGCATCATCAAACCTTCATGGAAATTATGTAGGATAA 978 0.454 MSEDVGKMKDSWFFDKNFNGLPDEAFDDVVNFFDFPLEDVEPNAVDEDWDAQLKRLEEPCFDVFSVSSTGLCAKAQDEKPQLGRSFSASCNKVSPIKQLAQTAGLTYGKTIPNQNLSFNGKDLHQYRTYSPVSVFESSSSSSAENSNHDLPPIPVKRARSRRQRPSNFSPPFSVPFILTSPALQNCQRTAASKSDLGSCLAAKSLYQAKKQRKKDLSMLAGHVEMKRSSSQESIPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRSRGIQQAVGGSLSASSNLHGNYVG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1605 325 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 303 - -
Dod10g1605 325 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Dod10g1605 325 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Dod10g1605 325 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Dod10g1605 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 296 - -
Dod10g1605 325 MobiDBLite consensus disorder prediction 137 170 - -
Dod10g1605 325 PANTHER GATA TRANSCRIPTION FACTOR 26 303 - -
Dod10g1605 325 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Dod10g1605 325 Gene3D - 235 309 IPR013088 GO:0006355|GO:0008270
Dod10g1605 325 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1605 Dod-Chr10 36980923 36984363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1605 15 307 C2C2-Gata Transcription Factor Family AT1G08010 37.374 9.07e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod10g1605 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1605 - - gmx:100813303 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1605 10 36980923 36984363 Dod10g1605 10 36980923 36984363 ECH
Dod10g1605 10 36980923 36984363 Dod03g2785 03 59675762 59680207 ECH
Dod10g1605 10 36980923 36984363 Dod03g2785 03 59675762 59680207 PCT