Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1578 ATGGGAAGAGCTCCATGCTGTGACAAGGCAAATGTGAAGAGAGGGCCATGGTCTCCTGAAGAAGACTCTAAACTGAAGGAGTACATGGACAAGCATGGCACTGGAGGAAACTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCTAACATTAAGCATGGAGAGTTCTCCGATGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCAGGACCGACAATGATATCAAGAACTACTGGAACACCAAGCTAAAGAAGAAGCTCATGAGTTTGCTTCCTCCTGCAGCTGGTACAACTCATCATCAGAGAAAACCTCCAGCATATCAATCTTCCTCATCCCCTCAAAACCCATCATTAATTCCTTCTCATAATCACTCACTGCCCCCTTCAGTTTACACAGATCATCACTACTACTCGACCCCTTATAGTTACAGCACACCTACCATATCTTTCAATGGCCTTGAACCAATTCCTGTTCCTTCAAGCACAAGCTGCACAACAACAACCTCCAATAATATCTCTCTCCCTGATCTCTACCGAAACCAAGAGCCCTTGATGAGTAGTGTTATTAGTTCCATGCAATTGCAGTACAATTACCCCATGAGAGACAGTGCTTTGTTCATGTTTGGTAGTGAAGGAAGTTGCAGTTCATCTGATGGGAGCTGTAGCCAGGTCAGCCATGGCAGGGAGATCAAGCAAGAGGAAATGGCTTTTCAGAATAATTACATGTCCTCCAACAAGTTTGAAGAGTACTGCAGCAATAATAACAACAACAACAACAATAATAACCTTATGCTTTGTCACGGAAGCAGCACTAATAGTACCAGTGATGGTCATGGAAGCGAGTACAATGTTATTAACCAATGGGCAGAAAAGCCAAACGGGTGCTTTTATCAAACGGCAGCAACAGTAACACCAATGGACTACGAACTAGAGGTTATTAAGCAACTTATTAGTAGTAGTAGTAACAGTAATAGCGGCAATATTAATATTAATAATGATGGGTACTTGAGTGTTGATGAAAACAAGACGGGGGAGAAGGGCATCATGTACAAGTACTACTAG 1152 0.4271 MGRAPCCDKANVKRGPWSPEEDSKLKEYMDKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMSLLPPAAGTTHHQRKPPAYQSSSSPQNPSLIPSHNHSLPPSVYTDHHYYSTPYSYSTPTISFNGLEPIPVPSSTSCTTTTSNNISLPDLYRNQEPLMSSVISSMQLQYNYPMRDSALFMFGSEGSCSSSDGSCSQVSHGREIKQEEMAFQNNYMSSNKFEEYCSNNNNNNNNNNLMLCHGSSTNSTSDGHGSEYNVINQWAEKPNGCFYQTAATVTPMDYELEVIKQLISSSSNSNSGNININNDGYLSVDENKTGEKGIMYKYY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1578 383 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod10g1578 383 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dod10g1578 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dod10g1578 383 Gene3D - 7 68 - -
Dod10g1578 383 PANTHER TRANSCRIPTION FACTOR RAX3 1 355 - -
Dod10g1578 383 Gene3D - 69 144 - -
Dod10g1578 383 PANTHER OS09G0431300 PROTEIN 1 355 - -
Dod10g1578 383 CDD SANT 16 62 IPR001005 -
Dod10g1578 383 MobiDBLite consensus disorder prediction 132 154 - -
Dod10g1578 383 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod10g1578 383 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod10g1578 383 MobiDBLite consensus disorder prediction 124 154 - -
Dod10g1578 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod10g1578 383 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod10g1578 383 CDD SANT 70 111 IPR001005 -
Dod10g1578 383 SMART sant 13 64 IPR001005 -
Dod10g1578 383 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1578 Dod-Chr10 36504265 36506897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1578 1 118 MYB Transcription Factor Family AT5G57620 89.831 4.03e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g1578 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1578 K09422 - gmx:100808114 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1578 10 36504265 36506897 Dod10g1578 10 36504265 36506897 ECH
Dod10g1578 10 36504265 36506897 Dod03g2737 03 59075476 59077835 PCT