Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1568 ATGGATGTTAACCATAACGACACAATCAATGATTTTGAGCTGCATGATTTCATTGACGGTCCCAACTTTGATCAGTTGATCAATTTGATTCGAGGGGAGAATGAAGATGCCATCTGCAACTATGGTCCTGACCTTATCAATGATTGCTTCGTTGGCAATAACCAGTCACTTCCATTTGACCATAGCAATGGTACTAATGCTGTGAATGTATATGATCCTACCCCTACACTTAGCTCTTTTTCTTGCTTTGATGGGGTGGTCAATGGAGTAGGAGAAGAGGAAAATGAAGGAGAGGAATCTTCTGCAACCACCCCAGCAACTGAGACTGTTAGTCCAAAAGCGAGGCGTAAAAGTGATAGGTCCAAGACTCTGATTTCCGAGAGGAGGAGGAGGAGCAGAATGAAGGAAAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAGGCATCGATCATTGGGGATGCAGTATCATATGTGCATGAGCTTCAAGCACAGGCTAAGAAGCTGAAGGCTGAGGTTGCAGGACTAGAAGCATCTTTATTAATGTCCGAAAATTATCAAGGGTCAGTTGACAACCCAATAAAGGTTCAAGTCAACCACAAAAGCCATCAAATCATCAAGAAGATCATGCAGATAGAAATGTTTCAAGTGGAGGAAAGAGGGTATTATGCGAGAATAGTGTGCAATAAAGGAGAAGGGGTGGCTACATCACTCTACAGGGCTCTTGAGTCTCTTGCAGGTTTCAATGTTAAGAATTCAAACTTGGAAACAGTTTGTGACAGTTTTCTACTTACATTTACATTGAATGTTCAAGGTTCTGAACCAGAAATTAATCTGCCAAATTTGAAGCTGTGGGTGACTGGCGCTCTACTGAACCAAGGCTTTGAATTCATGGCATCTTTTCATGCTTGA 927 0.4175 MDVNHNDTINDFELHDFIDGPNFDQLINLIRGENEDAICNYGPDLINDCFVGNNQSLPFDHSNGTNAVNVYDPTPTLSSFSCFDGVVNGVGEEENEGEESSATTPATETVSPKARRKSDRSKTLISERRRRSRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHELQAQAKKLKAEVAGLEASLLMSENYQGSVDNPIKVQVNHKSHQIIKKIMQIEMFQVEERGYYARIVCNKGEGVATSLYRALESLAGFNVKNSNLETVCDSFLLTFTLNVQGSEPEINLPNLKLWVTGALLNQGFEFMASFHA* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1568 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 183 IPR036638 GO:0046983
Dod10g1568 308 MobiDBLite consensus disorder prediction 112 129 - -
Dod10g1568 308 Coils Coil 164 184 - -
Dod10g1568 308 CDD bHLH_AtFIT_like 117 192 - -
Dod10g1568 308 MobiDBLite consensus disorder prediction 92 129 - -
Dod10g1568 308 SMART finulus 124 173 IPR011598 GO:0046983
Dod10g1568 308 Pfam Helix-loop-helix DNA-binding domain 125 168 IPR011598 GO:0046983
Dod10g1568 308 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 304 - -
Dod10g1568 308 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 9 304 - -
Dod10g1568 308 ProSitePatterns EF-hand calcium-binding domain. 2 14 IPR018247 -
Dod10g1568 308 Gene3D - 111 184 IPR036638 GO:0046983
Dod10g1568 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1568 Dod-Chr10 36387245 36388516 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1568 3 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.038 4.68e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g1568 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1568 - - gmx:100805451 402.905