Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1562 ATGGACATGGAATTAGGCATAGGCACCGAGGAAGTTCTTGTTGGTTCGTGCAATAACAAAACCAACGATGTCGATGCGTCCCACATCGCCAAGGGCAAGCGCACCAAGAGGCTCCGACCCTTGTCCCCATGCGCCGTTACCGCCGCCGCGATTTCCAGCTCCTCCAGCGCCTCCGAGGAACACGGAAGCGGAGGCGGCGGCGACGACTACGGCTCGTTCTCTTCCACAACCACCTTTGAAAGCACCGACCAGGAAGAAGAAGACATGGCTAACTGCTTGATTCTCCTTGCTCAAGGAAAAAGAGGAAGAGGAGATCAAGAAGATGGCAATATTAAGATGAGAGAGAAGAGTAGCAATCGCACCTCCAACAACAACAACAACAACCGAAGATTCTCGGAGGTAGCCACCACCGCAACAACTGCCACCACGAAAGTCGGTTTTTACATCTATGAGTGCAAAACTTGCAACCGAACATTCCCTTCGTTTCAAGCGCTTGGTGGCCACAGGGCCAGCCACAAGAAGCCAAAGGCCACGCCAGAGGGAAAGAAACCGCAATCGCCAACAAGATTGCCACTAGTTGCTAATTGCGAGATTGAAGAAACAAAACAAGCCCATGTCATGAGTAGCCCTCCTCCAATTTCACTTCAATTAGGGTGCGGTGCTAGTAACAATAACAATAGAGGTTCTAATGGTGGCATCAACAAGTCCAATAAGGTTCATGAGTGTTCGATTTGCGGATCCGAATTCACATCCGGGCAAGCGTTGGGTGGACACATGAGGAGGCACAGGGCATCTGCTAGTACTATTAGTGCTCCTCAGGTGGTGGATCACATTAAGACAAGTGGTGATAAGCCACGGAATGTTCTAGAATTGGATCTTAACCTTCCGGCGCCACCGGAGGACGATCACCACCGGGATTCCAAGTTTCACTTCACGGCCACACAGAAGACCATGGTGCTGTCTGCTGCTCCGGCTTTGGTGGGTTGCCATTATTAG 996 0.511 MDMELGIGTEEVLVGSCNNKTNDVDASHIAKGKRTKRLRPLSPCAVTAAAISSSSSASEEHGSGGGGDDYGSFSSTTTFESTDQEEEDMANCLILLAQGKRGRGDQEDGNIKMREKSSNRTSNNNNNNRRFSEVATTATTATTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKATPEGKKPQSPTRLPLVANCEIEETKQAHVMSSPPPISLQLGCGASNNNNRGSNGGINKSNKVHECSICGSEFTSGQALGGHMRRHRASASTISAPQVVDHIKTSGDKPRNVLELDLNLPAPPEDDHHRDSKFHFTATQKTMVLSAAPALVGCHY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1562 331 MobiDBLite consensus disorder prediction 101 115 - -
Dod10g1562 331 MobiDBLite consensus disorder prediction 166 188 - -
Dod10g1562 331 SUPERFAMILY beta-beta-alpha zinc fingers 149 262 IPR036236 -
Dod10g1562 331 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Dod10g1562 331 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Dod10g1562 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Dod10g1562 331 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 16 331 - -
Dod10g1562 331 MobiDBLite consensus disorder prediction 101 133 - -
Dod10g1562 331 PANTHER ZINC FINGER PROTEIN ZAT5 16 331 - -
Dod10g1562 331 Pfam C2H2-type zinc finger 150 175 - -
Dod10g1562 331 Pfam C2H2-type zinc finger 239 264 - -
Dod10g1562 331 MobiDBLite consensus disorder prediction 116 133 - -
Dod10g1562 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Dod10g1562 331 Gene3D Classic Zinc Finger 148 262 - -
Dod10g1562 331 MobiDBLite consensus disorder prediction 50 84 - -
Dod10g1562 331 SMART c2h2final6 150 172 IPR013087 -
Dod10g1562 331 SMART c2h2final6 240 262 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1562 Dod-Chr10 36322445 36323781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1562 25 331 C2H2 Transcription Factor Family AT2G28200 43.519 9.98e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1562 zf-C2H2_6 1.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1562 - - aprc:113855228 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1562 10 36322445 36323781 Dod10g1562 10 36322445 36323781 ECH
Dod10g1562 10 36322445 36323781 Dod06g1212 06 16222368 16223549 ECH
Dod10g1562 10 36322445 36323781 Dod03g2718 03 58818313 58818993 ECH
Dod01g2777 01 67634484 67635655 Dod10g1562 10 36322445 36323781 ECH
Dod07g0126 07 1508882 1510134 Dod10g1562 10 36322445 36323781 ECH
Dod10g1562 10 36322445 36323781 Dod03g2718 03 58818313 58818993 PCT