Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1560 ATGCACATGAGGGCTCATGGGGATGAGTACAAGACAAGTGCTGCATTAAGCAACCCTTTGAAGCATAGGGGGAGCTTGTTGGGTGGGGGAGGAAGAGATCAGTGTTTGATCAGTGTGAAGCCCAAGAAATATTCATGCCCTCAAGAAGGGTGTAGATGGAACAAGAAGCATGCCAAGTTCCAGCCATTGAAGTCCATGATTTGTGCAAAGAATCATTACAAGAGGAGCCATTGCCCAAAGATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGGACACATGAGAAGCACTGTGGGAATCTCAAGTGGCTGTGCTCTTGTGGCACCACGTTCTCAAGGAAAGACAAGCTCATGGGCCATGTTTCTTTGTTCGTTGGGCACAGACCAGCTGCTACCAATGGCTTGTCATACACAGGAAAATTGGAGCCGCAGGGATTGCAACTGCAGATGGAAGGCAGTTAA 483 0.4886 MHMRAHGDEYKTSAALSNPLKHRGSLLGGGGRDQCLISVKPKKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGNLKWLCSCGTTFSRKDKLMGHVSLFVGHRPAATNGLSYTGKLEPQGLQLQMEGS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1560 160 Gene3D Classic Zinc Finger 80 130 - -
Dod10g1560 160 PANTHER OS08G0562300 PROTEIN 1 140 - -
Dod10g1560 160 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 140 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1560 Dod-Chr10 36309420 36309902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1560 1 137 C2H2 Transcription Factor Family AT5G22890 70.073 7.16e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1560 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1560 - - var:108332918 274.248