Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1553 ATGGCTATTGCTGGTTTGCATAGTGTTGCTGTGATTGACTCTACACTCCTTAGGGAGTCTCATTCTCAGTTACCTGGTAGAAGAGGAGATGGAGGGAGGGGCGGCGCCGCCGGGCCGTCTTCGCTCTTGCAAATGTGGCGAGAGATAGAAGATGAGCATGTGGTGAGTCAAGTTCAACAGAGGAGTGCTACTGATGGGTTGATTGCAGACCTCTCTGGGGGAAATATGCCAGATGTTCATCAGAGAGGAGAAGGGCATGTGATGGAAGATGGTGTTTTGGGTGAAAATGAGTCAGAAACATGGTCACAGTCACAAGGTCAGAATGAGTTCCATGATGAACAGGAGGAGGGTTTAACCAATTCTAACTGTGAGAACTCTTCTGATTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTAGGGATGATCATGGATCAAACATTTCCCGAGTAAGTAGTGGTTCAAGGGGAGAATGGCTTGGGGAAAATGAGCAGGAGAGGGTGAGTATCATAAGGGAGTGGGTGCAAGTGAGTAGCCAGCAGAGAAGTGTGTCTTCTGGCGAAAATAGGGAAGAACATTCTTCTGAGATTGGTTACCAAATCGAACGTGTTCTTGATGGTTTTGTTGTTAATCAGCATGAGGGACAAACTGAGCAGACCCGGAGGGGAATGCGCAGGTTACGCGGTCGACAGGTTCTGCTCGATATGCTTAAGAAGGCTGAGATGGAAAGGCAAAGAGATGTTCAGGAATTGTTGGAACATCGGGCTGTATCTCGTTTTCCCCATCGCAATCGAATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGACTAATAATAGCCGGTCCTCTTCCATTGCAGAGAGTGAACTGGGCTTATTGAGGCAAAAACAGACTGTATCGGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAACTCTGGTTGCAGTCAAGTGACCAGCAACCTATCTGACACCTCATCTAATAGTGGTGATGATGTTAATGCAAGTGAACATGCTGGAGCCAGCAGTTCGCAAATGACTCCATCTGTACGTCCTGAAAAATCTGAGTCTAATAGCAATGAAAGTGACAGACTCGGTATATTAGGTGGTCAAAATTGTTCACAACAAGGAACCACTTGTGAGAGTTTAGACTGTCAAGACTCTGCTGCTTATGCTAACACAAGAGATGGAGCATTGTCATCCAGTATGGGGGTTGAAACCAGAGATGGCACTGGACAAAATGTTGTTATGGTGACAGCTGAAGATACTACTTGTGACCTTACCCAACAAAGCTTGCAGATTGATGATACAGAGCATAACAATATGCAGGTTGAGCAATCTGAGCTGGTTGATATAACTGATGATGAAAGCAATTTATCACATCACCACAGTCATGTAGAGGGCAATATTGTTGATGATGTGGATTGGGATGAATCTGTTGCTCTGGAAGGAGAGCAACAGGAAGAGGCTGTTACTGAGAATGATGGAAGTGACTGGCATCAAACTAACATTGAATGGAGTACCACTGAGGGAAGTGTGGAAGATAACCAACTCAGCAGCCCATCAAATGAACTGCCCCAAAACATCTTGGGAAATGAAGATGGAGAAAATTCTCGTCTACAAGAAGCCCCAGAAGTGTGGCAAGAAGACAGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGACCTTCTGATCATGAAGCAGCCCCAGTTGGTAGAATCCATGGATTTTATTTTCCAGACGATGACAATGTGTACAGTGTCGAACTTAGGGAATTGCTGAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGTAGTTTTCGTGAAAGTCTTGATCAGCTGATACAGTCATATGTTGAAAGGCAGGGTCATGCTAACCTTGAGTGGGAGCTGCAAGAACCAACACCTTTCACTCCTTCGGCAGAACAGGACCTGGAGCAGCAGAGTAGGGATCGGATTGTTGGTACTGAGGACTCAGTTAATGGTTCACTTGGTGTACCCTTGCCACCAACACCTCCTCCCCTGCCTATATGGGATCGGCACTTGCGCCATGACAACTGGTCACAGAATGACATAAATAATCAGCGCCTAGGAATTGAGTGGGATGTTATTAATGACTTGAGAGTTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCCATAAGACAAGAAGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGCGAACATGATTCACCAGATGATAAGTCCAAATGGGAATGCGTGAGAAAAGGACTTTGCTGTATATGCTGCGACACCAATATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCACGTGTTCAAAATGTGCCAATGATTTACTCGAGAGTGGAAGAAAGTGTCCAATGTGTCAAGCACCGGTGGTGGAAGTGATACGTGCTTATTCTATACAGTAG 2529 0.4555 MAIAGLHSVAVIDSTLLRESHSQLPGRRGDGGRGGAAGPSSLLQMWREIEDEHVVSQVQQRSATDGLIADLSGGNMPDVHQRGEGHVMEDGVLGENESETWSQSQGQNEFHDEQEEGLTNSNCENSSDLGEVERERVRQIFREWMNSGARDDHGSNISRVSSGSRGEWLGENEQERVSIIREWVQVSSQQRSVSSGENREEHSSEIGYQIERVLDGFVVNQHEGQTEQTRRGMRRLRGRQVLLDMLKKAEMERQRDVQELLEHRAVSRFPHRNRIQALLRGRFLRNDRSTNNSRSSSIAESELGLLRQKQTVSGLREGFFFRKDNSGCSQVTSNLSDTSSNSGDDVNASEHAGASSSQMTPSVRPEKSESNSNESDRLGILGGQNCSQQGTTCESLDCQDSAAYANTRDGALSSSMGVETRDGTGQNVVMVTAEDTTCDLTQQSLQIDDTEHNNMQVEQSELVDITDDESNLSHHHSHVEGNIVDDVDWDESVALEGEQQEEAVTENDGSDWHQTNIEWSTTEGSVEDNQLSSPSNELPQNILGNEDGENSRLQEAPEVWQEDSGFQEAVEIWLGGPSDHEAAPVGRIHGFYFPDDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHANLEWELQEPTPFTPSAEQDLEQQSRDRIVGTEDSVNGSLGVPLPPTPPPLPIWDRHLRHDNWSQNDINNQRLGIEWDVINDLRVDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTREHDSPDDKSKWECVRKGLCCICCDTNIDSLLYRCGHMCTCSKCANDLLESGRKCPMCQAPVVEVIRAYSIQ* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1553 842 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 842 - -
Dod10g1553 842 MobiDBLite consensus disorder prediction 523 552 - -
Dod10g1553 842 ProSiteProfiles Zinc finger RING-type profile. 790 829 IPR001841 -
Dod10g1553 842 SUPERFAMILY RING/U-box 789 835 - -
Dod10g1553 842 Coils Coil 718 745 - -
Dod10g1553 842 MobiDBLite consensus disorder prediction 523 548 - -
Dod10g1553 842 MobiDBLite consensus disorder prediction 98 131 - -
Dod10g1553 842 MobiDBLite consensus disorder prediction 329 383 - -
Dod10g1553 842 CDD mRING-HC-C3HC5_NEU1 790 828 - -
Dod10g1553 842 Pfam Zinc finger, C3HC4 type (RING finger) 787 834 - -
Dod10g1553 842 MobiDBLite consensus disorder prediction 151 168 - -
Dod10g1553 842 PANTHER PROTEIN, PUTATIVE-RELATED 1 842 - -
Dod10g1553 842 MobiDBLite consensus disorder prediction 148 168 - -
Dod10g1553 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 766 840 IPR013083 -
Dod10g1553 842 MobiDBLite consensus disorder prediction 760 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1553 Dod-Chr10 36259699 36266207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1553 790 836 C3H Transcription Factor Family AT3G06140 38.298 7.77e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1553 - - gmx:100804887 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1553 10 36259699 36266207 Dod10g1553 10 36259699 36266207 ECH
Dod10g1553 10 36259699 36266207 Dod03g2710 03 58729829 58735219 ECH
Dod10g1553 10 36259699 36266207 Dod03g2710 03 58729829 58735219 PCT