Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1529 ATGGGCAGCAAGGTCACAGTGACGGACCACCACTTATCCACCGTCCGATCCGTCGTGGGCTCGGAATTCAGCGACATGGACATCATCAGAGCCCTCCACATGGCCAAAAACGACGTCACCGCCGCCATCAACATCATCTTCGACACCCACACCCACACCCACACCCCAACCACCAACACCACCAAACCCAAACCCAAACCCCAACCTCCTTCTCCTCTCAATTCAACTTCTCAATCTCACACTGCTACTCGCACCGTCTCCGCCAACCAAAATGGCGCCGCTGCACCTGACGCCTTCGATTGGTGGTTCGCCGGTTCCAGCGAGATGGCAGGGCTTTCAACATGTAAAGGGAGGACCATAAATTCCGGCGATGCAGTGTCTTTCAAGTTTCCGATGAAGGCGGCTTCGCCATCGCCGGGAAAAGGGTTCGGGCGGGGCCGGCAGGCCGCGGGGACTTGTTCGGAGATTGTTCGGTTCTTCACGGAACAAGCTGGGGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTACCTCTTGTGCGGGATGGTAAGGTTAAGATTGAGGGGCACTGTAAATATGCACCTAATGTTTTGGGCATCATGGATACCATTGTTTTGTCAGTGAGAACCATCAGGTTTCTCTCAAGGACGCTACCACCAATTCCACTGGACGAATCGGTGTTTCATCCTCTTCCAACCTTGTTTCGGCTGATAGGCTTGAAGCCTTTTAAGAAGGCAGAGTTAACTCCTGGTGACTTCTATTCCAACAAGCGTCCTTTCAAGCAGAAGGTCCCATTACAACTGACCAAGTCCGAGCATCCCTCTCAAAATGGTTGTGAGAATGACAAAGAGGATTCCATTTCTGAAACTGATCTTGATAACATTGTTGGTGTTGGATCAAGCTCAGAGTTAGAGGAAATGGATCCCCCAGGCAGTCTTCAGTGTGAACTGCGGCCCTATCAGAAGCAGGCTCTGTATTGGATGCTCCAGATGGAGAAGGGACGGCATGTGGATGAGACAGCAACAACCCTTCATCCATGTTGGGAGGCATATCACTTGTCCGACAAGAGGGAGCTTGTTATTTATTTGAATGCATTTTCTGGTGAAGCCTCTATTGAATTTCCAAGCACCCTTCAAATGGCCAAAGGAGGAATTTTGGCAGATGCAATGGGACTTGGGAAGACCATAATGACCATATCCCTTCTCCTTGCCCATTCAGGAAGGGGTGGATCATTAGGCCATCAACCCATAGCTCAGACTCAGTCATATACCGAAGGTGGTGAAGTTAGTGATACAGCACACAACCTTTCAAACATCCCAAAGAAGGCAACTAAATTTGCTGGTTTTGATAAGCTGATGAAGCAAAAGAATGCTCTAATAAGTGGTGTCAACTTGATAATATGTCCTATGACCCTTCTTGGGCAGTGGAAGGCAGAAATTGAAACTCATGTGCAACCTGGGTCTCTGTCTCTATATGTTCATTATGGACAAAGCAGGGCAAAAGATGCAAAAAGTCTTGCTCAAAATGATGTTGTAATTACTACATATGGAGTTTTAGCCTCTGAGTTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTTCTCTCAATACGGTGGTTTAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCCAAAAGCCAAATTTCTATGGCTGCTGCTGCTTTAACTGCTGATAACCGTTGGTGTCTTACTGGCACTCCTATCCAGAACAACCTTGAGGATATTTACAGTCTTCTTCGGTTTCTGAGAATAGAGCCCTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAACCATTTGAAGGAGGTGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCAATCATGTTGAGAAGGACCAAGTATAGCACAGATCAAGAGGGCAAGCCTATCCTAGTTCTCCCTCCGGCTGATATGCAGGTAATTTATTGTGAACCCACAGAGGCTGAGAAGGACTTTTATGAGGCCCTATTCAAAAGGTCTAAGGTCAAGTTTGACCAGTTTGTTGAACAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTGCTTTTACGTCTAAGACAATGTTGTGATCATCCATATCTAGTAATGAGCCGAGGTGATACTCAAGAATTTTCCGATCTAAACAAACTAGCTAAGCGCTTTCTTCAAGGAACTGGTGATGCTTCAGAAGGTGAAGTAAATGATGCACCTTCACTGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACCCCTTGTGCCCATCGCTTATGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTATACTTCTGGTTTATGTCCTGTTTGTAGGAAGATAATCAGCCGGCAGGATCTTATCACTGCCCCTACTGAGAGCCGGTTTCAAATTGATATTGAGAAGAACTGGGTAGAGTCATGCAAGATAACTATTCTTTTGCATGAACTTGAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCTTTTACACGGAATAACATTTCATTTGTTCGTCTTGATGGGACTTTAAATCAGCAGCAGCGGGAGAAAGTAATCAAACAATTCTCAGAGGACAGTGACACGCTGGTGCTGTTGATGTCATTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCGGCTTCAAATGCTTTTGTCATGGACCCATGGTGGAATCCGGCTGTAGAAGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATCGTGAAGGTATATTTAATTTCCCAATTTTGGAAAATCATTAACATATCTCATGTGGTTGTATTATTGTATATTTTTAAATGGGCATGA 2970 0.4549 MGSKVTVTDHHLSTVRSVVGSEFSDMDIIRALHMAKNDVTAAINIIFDTHTHTHTPTTNTTKPKPKPQPPSPLNSTSQSHTATRTVSANQNGAAAPDAFDWWFAGSSEMAGLSTCKGRTINSGDAVSFKFPMKAASPSPGKGFGRGRQAAGTCSEIVRFFTEQAGEIGRIPNEWARCLLPLVRDGKVKIEGHCKYAPNVLGIMDTIVLSVRTIRFLSRTLPPIPLDESVFHPLPTLFRLIGLKPFKKAELTPGDFYSNKRPFKQKVPLQLTKSEHPSQNGCENDKEDSISETDLDNIVGVGSSSELEEMDPPGSLQCELRPYQKQALYWMLQMEKGRHVDETATTLHPCWEAYHLSDKRELVIYLNAFSGEASIEFPSTLQMAKGGILADAMGLGKTIMTISLLLAHSGRGGSLGHQPIAQTQSYTEGGEVSDTAHNLSNIPKKATKFAGFDKLMKQKNALISGVNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRAKDAKSLAQNDVVITTYGVLASEFSSENAEDNGGLLSIRWFRVVLDEAHTIKSSKSQISMAAAALTADNRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEGGDERGLKLVQSILKPIMLRRTKYSTDQEGKPILVLPPADMQVIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPYLVMSRGDTQEFSDLNKLAKRFLQGTGDASEGEVNDAPSLAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNYTSGLCPVCRKIISRQDLITAPTESRFQIDIEKNWVESCKITILLHELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNQQQREKVIKQFSEDSDTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKVYLISQFWKIINISHVVVLLYIFKWA* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1529 989 SMART helicmild6 867 950 IPR001650 -
Dod10g1529 989 SMART ultradead3 315 618 IPR014001 -
Dod10g1529 989 Gene3D - 443 635 IPR038718 -
Dod10g1529 989 Gene3D - 650 766 IPR027417 -
Dod10g1529 989 MobiDBLite consensus disorder prediction 73 90 - -
Dod10g1529 989 Gene3D - 817 969 IPR027417 -
Dod10g1529 989 ProSiteProfiles Zinc finger RING-type profile. 768 808 IPR001841 -
Dod10g1529 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 964 IPR027417 -
Dod10g1529 989 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 377 596 IPR014001 -
Dod10g1529 989 CDD RING-HC 768 807 - -
Dod10g1529 989 SUPERFAMILY RING/U-box 757 814 - -
Dod10g1529 989 SMART HIRAN_2 104 214 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dod10g1529 989 Pfam Helicase conserved C-terminal domain 838 950 IPR001650 -
Dod10g1529 989 Pfam HIRAN domain 105 210 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dod10g1529 989 MobiDBLite consensus disorder prediction 52 90 - -
Dod10g1529 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 634 IPR027417 -
Dod10g1529 989 ProSitePatterns Zinc finger RING-type signature. 783 792 IPR017907 -
Dod10g1529 989 Gene3D - 376 430 IPR038718 -
Dod10g1529 989 Pfam Zinc finger, C3HC4 type (RING finger) 765 812 - -
Dod10g1529 989 CDD DEXDc_SHPRH-like 319 634 - -
Dod10g1529 989 Pfam SNF2-related domain 322 713 IPR000330 GO:0005524|GO:0140658
Dod10g1529 989 PANTHER DNA REPAIR PROTEIN RAD5 99 963 - -
Dod10g1529 989 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 99 963 - -
Dod10g1529 989 CDD SF2_C_SNF 834 961 - -
Dod10g1529 989 SMART ring_2 768 807 IPR001841 -
Dod10g1529 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 767 816 IPR013083 -
Dod10g1529 989 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 838 989 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1529 Dod-Chr10 36008117 36016650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1529 1 963 RAD5 or RAD16-like Gene Family AT5G22750 69.246 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod10g1529 SNF2_N 9.2e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1529 K15505 - gmx:100794452 1592.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1529 10 36008117 36016650 Dod10g1529 10 36008117 36016650 ECH