Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1526 ATGGAGTTTTGGGGTGCTGAGGTTAAGGCTGGTGAGTGTGTTAAGGTGGACCCTGTCGGCGAATTCGAGGCATGCTTACACCTTTCTCAGGTTGCTCTTGGTGAGTCCAAGAAGGACAAACCGACTGAGCCTGTGCTTGTTTACTTGAAGGTTGACGAGCAGAAATTTGTTTTGGGGACTCTTTCCCGTGATAAGTTTCCTCAAATAGCTCTTGATTTGGTTCTGGAGAAGGAGTTTGAGATTTCCCACAACTCAAAGAATGCCAGTGTCCATTTCTGTGGATACAAGTCATTCTTCCCTGATGATGAGGAGGATGATTTTTCAGATGATACTGACAGTGAAGATATCCCACTGCCAATCACAGAAAATGGAAAACCTGTAGCAAAAGCTGAACCTCCAAAGGTTTCTCAATCTAAAAAACCTGATGCCAAGGCTAGTGCACCAGCAAAACAAGTGAAGGTTGTTGAACCAAAGAAGGATGAAGAGGAGGGATCTGATGATGATTCTGATGAGTTAGATGAATTTGGAAGTTCTGACGATGAGATGGAGGATGCAAGTGATAGTGATGACGAGAGTGATGAAGATGAAGATGAGGAAGAGACCCCACCTAAGAAGTTGGATCAGGGGAAGAAGAGGTCCAATGACTCTGCATCAAAAACTCCAGTTCCTACGAAGAGACCAAAAAATGCTACTCCTGAGAAGACTGATGGTAAGAAAGGTGGACATACAGCAACTCCTCACCCAATGAAGAAGGTTGGAAAGACTCCCAGCAGTGAAGGCAAGGACAAGACTCCCAAGTCTGGCGGACAATTCTCATGCAAAAGTTGCAGCAAGAATTTCAACTCTGAGGGTGGTCTCCAACAACATAACAAGGCCAAGCATGGTCAGTGA 891 0.4501 MEFWGAEVKAGECVKVDPVGEFEACLHLSQVALGESKKDKPTEPVLVYLKVDEQKFVLGTLSRDKFPQIALDLVLEKEFEISHNSKNASVHFCGYKSFFPDDEEDDFSDDTDSEDIPLPITENGKPVAKAEPPKVSQSKKPDAKASAPAKQVKVVEPKKDEEEGSDDDSDELDEFGSSDDEMEDASDSDDESDEDEDEEETPPKKLDQGKKRSNDSASKTPVPTKRPKNATPEKTDGKKGGHTATPHPMKKVGKTPSSEGKDKTPKSGGQFSCKSCSKNFNSEGGLQQHNKAKHGQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1526 296 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Dod10g1526 296 MobiDBLite consensus disorder prediction 161 201 - -
Dod10g1526 296 Gene3D Nucleoplasmin core domain 1 99 - -
Dod10g1526 296 SUPERFAMILY beta-beta-alpha zinc fingers 262 293 IPR036236 -
Dod10g1526 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 296 IPR013087 -
Dod10g1526 296 MobiDBLite consensus disorder prediction 103 296 - -
Dod10g1526 296 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 292 - -
Dod10g1526 296 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Dod10g1526 296 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 292 - -
Dod10g1526 296 MobiDBLite consensus disorder prediction 262 289 - -
Dod10g1526 296 MobiDBLite consensus disorder prediction 229 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1526 Dod-Chr10 35954970 35958347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1526 1 294 C2H2 Transcription Factor Family AT5G03740 37.618 2.46e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1526 NPL 2.7e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1526 - - gmx:100795506 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1526 10 35954970 35958347 Dod10g1526 10 35954970 35958347 ECH
Dod10g1526 10 35954970 35958347 Dod03g2420 03 55559202 55562090 PCT