Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1512 ATGGATTTTGAGTGTGCATCTCCTTGTTATCATTCCCCTTCATCACCATCATCTTCTTCTTCTCAAAGCCAACTCTCACCAAACCCGGAACAATCTCCACCACCAGGTTCATCATCATCGCATGCACGTGTTCACAAGAAGAAAGCTGGGAGGAAGAAGTTCCGTGAGACGAGGCACCCGGTGTATAAGGGTGTCCGCCAAAGGAACGGGGACAGGTGGGTTTGTGAAGTTAGGGAACCGAATAAGAAAACAAGGATATGGCTTGGGACATACCCTACCCCTGAAATGGCTGCTAGGGCACATGATGCCGCTGTCCTTACACTTAGGGGCGCCTCAGCCATGTTTAATTTCCCTGACTCAATTTCTCTTCTCCCAATTGCAAGGTCATCTTCACATATGGATATTCAAGCAGCTGCAGCAAAAGCCGCGGAGGCTTTTGCACCAACCAAGGCTAGCCCTTCTTCTTTGTGCTTAGCATCCACTTCCACTGCAACCGACCATTTTGTTGATCAGACAAATCACCCTTGTTTGGTGGATGATAGTAAGGGTCGAGAAAGGGTACTAGAGGGCGACCATGTTGTTGTTGATAACACGTGTACAAAAGATGAGATTGGGAATGATGAGGAGGAGTCCAAATCGATGTTCTTTGATGAGGAGGCATTGTTTAATATGCCTGGTTTGTTAGATAGTATGGCGGAGGGTCTGCTTATAACCCCACCATCCATGAAGCGAGCTTTTGATTGGAACGATGTTGAATGCGAGACTGACCTCAATCTATGGACTGACTAG 789 0.4728 MDFECASPCYHSPSSPSSSSSQSQLSPNPEQSPPPGSSSSHARVHKKKAGRKKFRETRHPVYKGVRQRNGDRWVCEVREPNKKTRIWLGTYPTPEMAARAHDAAVLTLRGASAMFNFPDSISLLPIARSSSHMDIQAAAAKAAEAFAPTKASPSSLCLASTSTATDHFVDQTNHPCLVDDSKGRERVLEGDHVVVDNTCTKDEIGNDEEESKSMFFDEEALFNMPGLLDSMAEGLLITPPSMKRAFDWNDVECETDLNLWTD* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1512 262 MobiDBLite consensus disorder prediction 41 59 - -
Dod10g1512 262 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Dod10g1512 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 261 IPR045277 GO:0003700
Dod10g1512 262 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Dod10g1512 262 MobiDBLite consensus disorder prediction 10 27 - -
Dod10g1512 262 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Dod10g1512 262 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 261 - -
Dod10g1512 262 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Dod10g1512 262 MobiDBLite consensus disorder prediction 1 59 - -
Dod10g1512 262 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Dod10g1512 262 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Dod10g1512 262 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Dod10g1512 262 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1512 Dod-Chr10 35734658 35735672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1512 46 261 AP2-EREBP Transcription Factor Family AT4G25470 44.907 5.25e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod10g1512 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1512 - - gmx:100816109 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1512 10 35734658 35735672 Dod10g1512 10 35734658 35735672 ECH
Dod10g1512 10 35734658 35735672 Dod03g2409 03 55329163 55331063 PCT