Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1491 ATGGGTTATTTGAGGGAGTGCAATGTAGAAGACAAGAATTTATACCTTCACACTACTACCCCAACTTTCATTGAATGGCTCAAACCATCTTCATCTTTAACTTGTTCACTATCATCAGCATCATCATCATCTCCTTCTTCTCAAACTCATCAGCATGAACTTGTCCATGAAACTATCCAGTTTTTACCCATCTTGAGTGGATTTAAGCCCTCCAAGGAAAACCATGGAGTGCAAAAGGAAGGTTATGAATATGAAGTAAAAGAAGAGAAGGTGGATCAGGTGACTGTGGCTTTGCACATTGGATTGCCAACCACAGGTGGTGGTGCTGGGTCTGATGATGAGAACAAGGTTTTCCATGTCAAGGAAGAAGGAAAGCCTGATGAGGCAACCCTCCAAAGCTGTTCTTTTAACCGGGAGAGAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCGATGCAGTTTGCTTGCTCAATATGCAGCAAGACCTTCAATAGATATAATAATATGCAGATGCACATGTGGGGGCATGGATCCGAATTCAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCGGCAATGCTAAGGCTACCATGTTATTGCTGTGCCCAAGGTTGCAAGAACAACATCAATCACCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACACTGCAAACACACTACAAGAGAAAGCATGGGACTAAACCATTCATGTGCAGGAAATGTGGGAAAACATTTGCAGTTAAAGGGGACTGGAGGACTCATGAGAAGAACTGTGGCAAGCTGTGGTATTGCACTTGTGGCTCAGATTTCAAGCACAAAAGGTCCCTTAAAGATCACATTAGATCCTTTGGGAAGGGTCATTCCCCACATCCTTCCCTTGAAGGCTTTGAGGATGAGAAGGAATGCGTTACCGGGTCTGATGACGATGAAGGTGCTCATACATGA 960 0.4437 MGYLRECNVEDKNLYLHTTTPTFIEWLKPSSSLTCSLSSASSSSPSSQTHQHELVHETIQFLPILSGFKPSKENHGVQKEGYEYEVKEEKVDQVTVALHIGLPTTGGGAGSDDENKVFHVKEEGKPDEATLQSCSFNRERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDEKECVTGSDDDEGAHT* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1491 319 SUPERFAMILY beta-beta-alpha zinc fingers 227 261 IPR036236 -
Dod10g1491 319 PANTHER ZINC FINGER PROTEIN WIP2 6 315 IPR043584 GO:0003700|GO:0010468
Dod10g1491 319 Gene3D Classic Zinc Finger 199 290 - -
Dod10g1491 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 261 IPR013087 -
Dod10g1491 319 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Dod10g1491 319 MobiDBLite consensus disorder prediction 288 319 - -
Dod10g1491 319 Gene3D Classic Zinc Finger 156 179 - -
Dod10g1491 319 SUPERFAMILY beta-beta-alpha zinc fingers 143 180 IPR036236 -
Dod10g1491 319 SMART c2h2final6 241 261 IPR013087 -
Dod10g1491 319 SMART c2h2final6 157 179 IPR013087 -
Dod10g1491 319 SMART c2h2final6 204 236 IPR013087 -
Dod10g1491 319 Pfam Zinc finger, C2H2 type 157 176 IPR013087 -
Dod10g1491 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Dod10g1491 319 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 6 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1491 Dod-Chr10 35353381 35357077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1491 16 309 C2H2 Transcription Factor Family AT1G08290 58.631 5.60e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1491 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1491 - - gmx:100802773 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1491 10 35353381 35357077 Dod10g1491 10 35353381 35357077 ECH
Dod10g1491 10 35353381 35357077 Dod03g2376 03 54754084 54758279 PCT