Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1484 ATGCTTTTCCCTGAAGAGAAGTGTGCATGTGGGATGTACCATCATCAAGGAAAGAACATGCACTCTTCATCAAGAATGTCAATCCCTTCTGAAAGGCACATGTTCCTTCAAGCAGGAAATGGGTCTGGTGATTCTGGACTTGTGCTCTCAACTGATGCCAAGCCTAGATTGAAATGGACTCCGGATCTTCATGCCAGGTTCATAGAAGCAGTCAATCAGCTAGGTGGAGCTGACAAGGCAACTCCTAAAACGGTAATGAAGCTCATGGGGATTCCAGGGCTTACCTTATACCATCTAAAGAGCCATCTACAGAAATACAGATTGAGCAAGAATTTACATGGACAAAGCAACAACAATGTGACGCACAAAATCAGTGCAACAACAAGTGAAAGAATTTCTGAACCCAATGGAACTCACATGAACAAATTAAGCCTTGGGCCACAGGCAAACAAAGATATACACATAAGTGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTACAGAGACACTTGCAGCTTAGGATAGAGGCACAAGGAAAATACCTGCAGTCTGTGATAGAGAAAGCTCAGGAGACACTTGGCAGACAGAATTTGGGAATAGTAGGACTTGAAGCTGCTAAATTGAAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGCCTGAACTCAGCATTTTCTGAAGTGAAGGAACTACAAGGATTCTGCCCTCAGCAAACACAAACCAACCTGCCAAACGACTGCTCAATGGACAGTTGCCTCACATCCTGTGAAGGATCGCAGAAGGAGCAAGAGATACAGAATGGTGGGGTGGGGTTAAGGCACTTAAATGGCCATGCATTCATGGAGAGAAAGGAAGCCACAATAGAAGCTCCAAACCTAAGGAACAATGAGCTCAAGTGGTGTGATGAAGTGAAAAGGAACGCTTTTCTCACCCCATTGGCAAGGAATGCAGAAAGAAGTCCAAGCAACTTGTCTATGACCATTGGACTTGAAAGAGAAACTGAGAATCACTCAGACGGTGAGTTCCAGCATAGAAACAACAGTAGGACAGAACCAATGAAACCATCATCAGCAGTGGATGAAAAGGGTTGTCAAGATTATAGGTTGCGTTCTAATTACTTTGCAGCAGCAAGATTGGACCTAAACTCACATGGAGGAGATAATAATGAAGCTGCAACAACGAGTTGTAAACAACTTGACTTGAATAGATTCAGTTGGAGTTAA 1251 0.4365 MLFPEEKCACGMYHHQGKNMHSSSRMSIPSERHMFLQAGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNNVTHKISATTSERISEPNGTHMNKLSLGPQANKDIHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVIEKAQETLGRQNLGIVGLEAAKLKLSELVSKVSSQCLNSAFSEVKELQGFCPQQTQTNLPNDCSMDSCLTSCEGSQKEQEIQNGGVGLRHLNGHAFMERKEATIEAPNLRNNELKWCDEVKRNAFLTPLARNAERSPSNLSMTIGLERETENHSDGEFQHRNNSRTEPMKPSSAVDEKGCQDYRLRSNYFAAARLDLNSHGGDNNEAATTSCKQLDLNRFSWS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1484 416 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 416 IPR044848 GO:0003700
Dod10g1484 416 PANTHER MYB-RELATED PROTEIN 2 12 416 - -
Dod10g1484 416 Coils Coil 156 176 - -
Dod10g1484 416 MobiDBLite consensus disorder prediction 341 357 - -
Dod10g1484 416 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 54 109 IPR006447 GO:0003677
Dod10g1484 416 MobiDBLite consensus disorder prediction 341 371 - -
Dod10g1484 416 Pfam Myb-like DNA-binding domain 56 107 IPR001005 -
Dod10g1484 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 111 IPR017930 -
Dod10g1484 416 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Dod10g1484 416 Pfam MYB-CC type transfactor, LHEQLE motif 153 200 IPR025756 -
Dod10g1484 416 Gene3D - 53 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1484 Dod-Chr10 35200857 35203723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1484 86 415 G2-like Transcription Factor Family AT3G04030 51.765 2.52e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod10g1484 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1484 - - gmx:100810396 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1484 10 35200857 35203723 Dod03g2365 03 54605876 54608861 PCT