Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1449 ATGAAGCGCCAACTCACCGTCCCTTCCACCAAGCCGCCGTTTGGTCCTCCCGCCGATTACCATCGCTTCGCCCCCGACCACCGCACAACTTCTCAAAACGACGCCGATTCCATTGTCGTTAAAACTCCTGTTCAATTAAAACGGAAGAGTGATGCAACCGAATTTGAAGCTGATTCCGGTGACAGGATGACTCCTTCATCTACTGAAGCAGCTAATAGTCCTTTTCAGACGCCTATACCAAAAAAGACAGGGAAGGCAAGCAAAGCCCCTAGACTTACAAAATGCAACAGATCTGGACCTCAAATCCCACACTCAAATATTGGTTCACCTTCAGTAAATAATCTCACTCCTGCCGGCCCTTGTCGTTACGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTGGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTAAAGAACAGAATTCAATGGAAGGGCCTGGATGTTTCAAGACCTGGGGAGTCTGATGATAGTTTTCCTAGTTTACAGGCTGATGTTGAAAATCTTACAATAGAGGAGCGGCGGTTAGATGACCAAATAAGAGAGATGCAAGAAAGGCTAAGGGATCTTAGTGAAGATGAAAGCACTCAGAAGTATCTTTTTGTCACTGAGGAAGATATAAAGAGCTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCCGTTGACTATCCTCAGAGGAGATACAGGATAGTCTTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTCTTAGTCAATTTGAAGAAAAATTTGAGGAGATTAATGGGGTTGATGTGGGGCCCAATCTTCCATCCACTCCAGAGTTTAACAAACTCCAATCCACAGTGGTCTCACAGGATAGAGGGAAGGACCTTGAAATAAAGGGGCAAGATGTTTACAGGCCTGGTTCAGATTTCTCTATTTCACAGGACTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATTTTGACAGCGATGCTGATTATTGGCTTTTATCTGATGCTGATGTCAGCATAACAGACATGTGGAGAATAGAACCCGAAGTTGAATGGGATAATCTGGGGTCTCCTAAAGAAGATTACAGTATGAGTCGTGTGAGCCCACCACCTCCCCAAACTCCTCCCTCGAATGTAAGTGAAGTGCCATCAGCATCTAACCCTGCTGGAGGTTGA 1329 0.4417 MKRQLTVPSTKPPFGPPADYHRFAPDHRTTSQNDADSIVVKTPVQLKRKSDATEFEADSGDRMTPSSTEAANSPFQTPIPKKTGKASKAPRLTKCNRSGPQIPHSNIGSPSVNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGESDDSFPSLQADVENLTIEERRLDDQIREMQERLRDLSEDESTQKYLFVTEEDIKSLPCFQNETLIAIKAPHCTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLLSQFEEKFEEINGVDVGPNLPSTPEFNKLQSTVVSQDRGKDLEIKGQDVYRPGSDFSISQDFVSGIMKIVPSDFDSDADYWLLSDADVSITDMWRIEPEVEWDNLGSPKEDYSMSRVSPPPPQTPPSNVSEVPSASNPAGG* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1449 442 SMART E2F_TDP_2 122 187 IPR003316 GO:0005667|GO:0006355
Dod10g1449 442 Gene3D - 116 189 IPR036388 -
Dod10g1449 442 MobiDBLite consensus disorder prediction 98 113 - -
Dod10g1449 442 Pfam E2F/DP family winged-helix DNA-binding domain 124 187 IPR003316 GO:0005667|GO:0006355
Dod10g1449 442 PANTHER TRANSCRIPTION FACTOR E2F 2 438 IPR015633 GO:0000978|GO:0006357
Dod10g1449 442 SUPERFAMILY "Winged helix" DNA-binding domain 122 185 IPR036390 -
Dod10g1449 442 Coils Coil 138 158 - -
Dod10g1449 442 CDD E2F_DD 202 304 IPR032198 GO:0046983
Dod10g1449 442 PANTHER TRANSCRIPTION FACTOR E2FB 2 438 - -
Dod10g1449 442 Pfam E2F transcription factor CC-MB domain 203 302 IPR032198 GO:0046983
Dod10g1449 442 MobiDBLite consensus disorder prediction 404 442 - -
Dod10g1449 442 Coils Coil 207 234 - -
Dod10g1449 442 SUPERFAMILY E2F-DP heterodimerization region 201 303 IPR037241 -
Dod10g1449 442 MobiDBLite consensus disorder prediction 1 113 - -
Dod10g1449 442 Gene3D - 195 304 - -
Dod10g1449 442 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1449 Dod-Chr10 34818534 34823943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1449 2 414 E2F-DP Transcription Factor Family AT5G22220 56.492 1.15e-147 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod10g1449 E2F_CC-MB 6.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1449 K06620 - gmx:100819817 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1449 10 34818534 34823943 Dod10g1449 10 34818534 34823943 ECH