Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1444 ATGCAGGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAGTCTGATATTTGGTCATTAGGGTGTTGTATTTATGAAATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCCTCTATTGGCCTGTTGCCATCCTGTTATTCCCCATCCTTGAAAACACTGATAAAGGGCATGCTGAGGAAAAATCCTGAGCATCGTCTAACAGCATCTGAGATCCTAAAGCACCCCTATTTACAACCTTATGTTAATCAATATCAACCATCTTTCTGTCCTCCAATTGCCTGGTCTCCTCAAAAGTCAATTACAGTTGTCTGTGGTCCTCGAAAAATTAGGCCCGGAAGTCAACACGACAGTAGTTCAAACAGTGACAAAGATAGTTTGATGTCAAGTGAGAGAAACATTGGAAAAGCAATGCCAAAGTGTGGCAACAAAACCACTGAGACAGATCGGGCATCAACTGAGGATGATGGGTCCAAGCATCTCATGCCTAGTGAAGAAGGAGATGGTTCGAGCAATGTCAATACTAAAACAGATGAGCAAGAAGTGATGAAGCCACCTGATAATGAACATCATTCTAATGTTTTATCTAAGGAACAAGAAACATTCAAGAATACAATGATGCCATTTAAAGACAGAAAAGTTAGAGAATCAAGTTCTCCCATGAGAGGCAATCGCATAAAGGCTGGCGCTGTATCAGTCCACAAAATAAATACAGAGACATTTTCCAAATTGCCCAAACCTAATTTTGGTGCCCCATGTTTGAAGCCTAATATAGAGGTACAAACTATTACACCTACAAAAGCAACCCCCGATTCTTCAAAACGAATGCACGGGTCACATCCTTCAAAGCACCAGTTACCAATGACAGAATCGTCACAAAAAACAAAGCCTCGAGATAATGTGACTCCACCATCTGGCCTTATCAAACAAGTAGAAGGAGATGGAGTTCTTTCCACGCCAAGGCTAAAGACTCCTCCAACATTACTTAAACCACCTTCATGTTTGGTACACATGAGGCAGGCTGGACTTGATGTTCCAAATGTAGTAAATGATATAAGAAATTCGAGTCCAAACAACATGGCTCATGAGCCTAAAATGAGTGATCATAAGTTGACTAATGGCCATGTGCCACATGTTTCTAGAGAGATGACTAGAGAGCCTCAGAAGGCTTTTGTATGCTGTTCCAAAGGATTGCAAACAGACAACAGCAATTCTGTCTCATCTTTGTTCTCTATTCAAGGATTTGAACTTTCTGATGCTGCAGCAACATTTATGGACTTGGGTGAACCTATGCATCCTGATCATGAGAGTGTCAACCACATTGAAAATGTGGAATCATGTGCAGACCGCAACTCACCTGCTACCTATTTACATTCTGAGACACCTGAAGAAGTGTCTGGGGAATCCTCTGGTTTTAGCCCAAATATTCTGAATAGAATTACTAGTAATGAGAAACTAAGTTCCACCTTACCTCTTGATCACCCAGTTCAAGATGCTAAGGTAATGTTTGCTCCTGATGATAGTTTTCCCGCAAATCGGACAACTATGGTGAGGGAAAGATTGTCATCAGTGGATGAAACTGCTCCTCTGATCATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCCAGAAGAGAAAGGAGCAGTTATACAGAATCCGGCACCAGGAAGGCCAGCTGTTGGCCTACTTCCTCCAGCTTTTGATGATGTCATCCACGTTATATGTCATAGCAGTTATCGAGTGGGGAGTGAGCAGCCGATGAAGGAATCTGTTGAAGTGGGAGCTCAAAATGTTGATGTTGGTAAGTTTATCAAAGTGGTAAGGGACGATCTAGAAATGGGAAATGTGAGCACTCCTTTGGCCCTTAAATCTTCAAGCTGCTCTGAAGATACTAGCTTGAAGTCAAATATCTCTGACAAATTGGAACTCAGAAACTTGAGCTCTCCTCCTAACCTTAGGTCTCCAAGTTGCCCCGATGCTTTGAGCTTGAAATCTAGTATCATTGGCTATACTGGCGTAAAGGAACAAGATGTGGAAGACCCTGATTCTGTAGTTTCCAGATCTGATTACACTGAGTACACTAGATATAACACTACTATAGCGAAAGAGGAAAAACCGGCAAAGGAAACTTTGGATGTTAAATCCTCGAGGCAGAGAGCTGAGGCACTTGAAGGGCTCTTAGAATTGTCTGCAGACTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTACTGAAGCCATTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCAAAGAGTCTAAAAGGATTGATGATTGAGGAAAGTGGGGCACGCTGTTCATGA 2403 0.4216 MQVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGLLPSCYSPSLKTLIKGMLRKNPEHRLTASEILKHPYLQPYVNQYQPSFCPPIAWSPQKSITVVCGPRKIRPGSQHDSSSNSDKDSLMSSERNIGKAMPKCGNKTTETDRASTEDDGSKHLMPSEEGDGSSNVNTKTDEQEVMKPPDNEHHSNVLSKEQETFKNTMMPFKDRKVRESSSPMRGNRIKAGAVSVHKINTETFSKLPKPNFGAPCLKPNIEVQTITPTKATPDSSKRMHGSHPSKHQLPMTESSQKTKPRDNVTPPSGLIKQVEGDGVLSTPRLKTPPTLLKPPSCLVHMRQAGLDVPNVVNDIRNSSPNNMAHEPKMSDHKLTNGHVPHVSREMTREPQKAFVCCSKGLQTDNSNSVSSLFSIQGFELSDAAATFMDLGEPMHPDHESVNHIENVESCADRNSPATYLHSETPEEVSGESSGFSPNILNRITSNEKLSSTLPLDHPVQDAKVMFAPDDSFPANRTTMVRERLSSVDETAPLIISTKISSQKVLPEEKGAVIQNPAPGRPAVGLLPPAFDDVIHVICHSSYRVGSEQPMKESVEVGAQNVDVGKFIKVVRDDLEMGNVSTPLALKSSSCSEDTSLKSNISDKLELRNLSSPPNLRSPSCPDALSLKSSIIGYTGVKEQDVEDPDSVVSRSDYTEYTRYNTTIAKEEKPAKETLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGARCS* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1444 800 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 3 397 - -
Dod10g1444 800 Pfam Protein kinase domain 2 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g1444 800 Gene3D Transferase(Phosphotransferase) domain 1 1 175 - -
Dod10g1444 800 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g1444 800 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 539 783 - -
Dod10g1444 800 MobiDBLite consensus disorder prediction 167 183 - -
Dod10g1444 800 MobiDBLite consensus disorder prediction 133 148 - -
Dod10g1444 800 MobiDBLite consensus disorder prediction 200 217 - -
Dod10g1444 800 MobiDBLite consensus disorder prediction 127 242 - -
Dod10g1444 800 SUPERFAMILY Protein kinase-like (PK-like) 2 147 IPR011009 -
Dod10g1444 800 MobiDBLite consensus disorder prediction 284 345 - -
Dod10g1444 800 SMART serkin_6 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g1444 800 MobiDBLite consensus disorder prediction 224 240 - -
Dod10g1444 800 MobiDBLite consensus disorder prediction 185 199 - -
Dod10g1444 800 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 3 397 - -
Dod10g1444 800 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 539 783 - -
Dod10g1444 800 MobiDBLite consensus disorder prediction 304 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1444 Dod-Chr10 34744167 34749190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1444 1 99 MAP Kinase Kinase Kinase AT1G53570 37.624 7.89e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dod10g1444 Pkinase 1.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1444 K08857 - gmx:100780141 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1444 10 34744167 34749190 Dod10g1444 10 34744167 34749190 ECH
Dod10g1444 10 34744167 34749190 Dod03g2315 03 53853242 53860632 PCT