Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1425 ATGGGCGAAATCGAAGTACCTCAATTTTTCCTATGTCCCATTTCGCTTGAAATCATGAAGGACCCCGTGACCACCGTGACAGGCATAACATACGACAGGGAAAACATCGAGCACTGGCTGCTAACAGCCAAGCATTGTGTCTGCCCCGTTACCAAGCAACCATTGGCAAGAAACTCGGATTTCTTGACCCCAAACCACACCCTTCGAAGGCTGATCCAAGCGTGGTGCTCGGCGAACGAATCCAACGGTGTCGATCGGATCCCGACCCCAAGATCCCCTCTCGACAGGCCTCAAGTCCAGAAGCTCCTCACGGATCTTGAGGTTCCTCGCAGCTTTCAAACGGCGTTGGAGAAGATGCATGGTCTAGCCACGGAAAGCGAGAGGAATAGAAGGTGCATGGCTGAAGAAGGGGTACCCAAGGCCATGGTTAACGTGATAACAAAGAGTTTCAAGCAAGGTAAGACCACGCTTCTTGAAGAAGCTCTAAGAATTCTTCACCTACTGTGTAGTACTTCATCATCCATAGCCGGCAATAACATGAGGCCCGTGGTAGGTGAAACCTTGGACTTCATCAACTCGTTGACTTGGATTTTGCAACAACTTCAAAACGATAACTACGCCAAGATGGTAAACGAAGCAATGCCAATACTGAAGTTAACAACCGAATTCACAGACTCAACCCTCTTGGGAAACTTAACCCGCGAGTTCTTCATAGGAATCGTTAAAGTGATGAGAAATAGAGCAATTTCTCAGCAAGCCATCAAATCCTCCTTGCATGTACTCATAGAAACGTGCCCTTTGGGTAGGAACAGAACAAAGATTGTGGAATCAGGTGCAGTCACTGAACTCATCGAGCTTGCACTCGAGAAGACAGAGAAGAACCTAACCGAGCTCATATTCAACCTTTTGGCGCACCTTTGTTCTTGTGCTGAAGGGAGGGAACAGTTTCTGAAGCACTCAGCTGGGATCGCAGTGCTTTCCAAGAGGACTTTGAGGGTCTCCCCTGCAACCGATGATCGATCCCTTCATGTATTTTTATTGATATCCAAGTTTTCGGCATCTAATGAGGTCGTTCATGAGATGCTCAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGACTGTGCTTCCTATCTGAAAGATAAGGCACGGGAGATTCTTAGGTTGCACTCCAAAGCTTGGAACAATTCTCCTTGTATTCAAGTGTATTTGTTAACAAGACACCAAAGGTGA 1242 0.4726 MGEIEVPQFFLCPISLEIMKDPVTTVTGITYDRENIEHWLLTAKHCVCPVTKQPLARNSDFLTPNHTLRRLIQAWCSANESNGVDRIPTPRSPLDRPQVQKLLTDLEVPRSFQTALEKMHGLATESERNRRCMAEEGVPKAMVNVITKSFKQGKTTLLEEALRILHLLCSTSSSIAGNNMRPVVGETLDFINSLTWILQQLQNDNYAKMVNEAMPILKLTTEFTDSTLLGNLTREFFIGIVKVMRNRAISQQAIKSSLHVLIETCPLGRNRTKIVESGAVTELIELALEKTEKNLTELIFNLLAHLCSCAEGREQFLKHSAGIAVLSKRTLRVSPATDDRSLHVFLLISKFSASNEVVHEMLRVGAVSKLCMVMQADCASYLKDKAREILRLHSKAWNNSPCIQVYLLTRHQR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1425 413 SUPERFAMILY ARM repeat 111 391 IPR016024 -
Dod10g1425 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Dod10g1425 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Dod10g1425 413 PANTHER WDSAM1 PROTEIN 3 410 IPR045185 GO:0061630
Dod10g1425 413 SUPERFAMILY RING/U-box 4 84 - -
Dod10g1425 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Dod10g1425 413 Gene3D - 97 399 IPR011989 -
Dod10g1425 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Dod10g1425 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 410 - -
Dod10g1425 413 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1425 Dod-Chr10 34546895 34548868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1425 3 403 U-box Gene Family AT2G35930 42.506 3.31e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1425 - - gmx:100778547 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1425 10 34546895 34548868 Dod10g1425 10 34546895 34548868 ECH
Dod10g1425 10 34546895 34548868 Dod03g2303 03 53569833 53571778 PCT