Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1424 ATGGATGAAATTGATGTTCCTGCTCATTTCCTCTGCCCCATTTCCCTTCAACTCATGAGAGATCCTGTCACGGTTTGCACTGGAATCACATATGATAGAGAGAACATAGAGAGATGGTTATTTTCATGCAAGAACAACACATGCCCCGTTACAAAGCAGTCCCTATTGGACACATTCCTCACCCCAAACCACACCCTCAGAAGGTTGATCCAATCTTGGTGCACCCTCAATGCCTCTCTTGGGGTTGAACGCATTCCAACTCCAAAGCCACCCGTTGACTCATCCCAGATTGTGAAACTCCTCGCTGAAGCAAAGAAGTTCCCTGACAAGCAACTCAATTGCCTTAGAAGGCTAAGATCCATTGCATTTGAAGGTGAAAGGAACAAGAACTGTTTGGAGTCTGCAGGAGCAATAGACTTCTTGGCATCAACAATGAAGAACAACATCATCAACATTATCCAACAAGATGATTCAACTGCTCTTATTAGCGAAGCTGCTATTGAAGTCTTGTTTCACCTAAACCCTTCTGAAAACCAGCTCAAGAACCTTATCAACAACGAGGGCATTCAGTTTCTTGAGTCATTGTTCCAAGTTTTGAGGCTTGGGAACTACCAATCTAGAGCTTATGCAACTATGTTGTTGAAGTCAGCATTTGGGGTGGCTGATCCAATCCAATTGTTAAGTGTGAAAACTGAACTCTTGGTGGAGATAATGAGAGTGCTGCGTGACCAGATTTCACACCAGGCTTCCAAGGCTGCATTGAAGCTTGTAGTGGAGCTATGTCCATGGGGTAGGAACAGAATCAAAGCAGTTGAGGGTGGTGCTGTTTGTGTCCTCATTGAGCTCCTTCTTGATGCCACTGAGAGAAGGGCTTGTGAGCTTATTTTAATAGCTTTGGATCAGCTTTGTGGTTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGCTGCAGGAGTGGCCATCGTGTCCAAGAAAATCTTGAGGGTCTCTCATGTGGCAAGTGATAGAGGGGTCAGGATTTTGGCCTCCATTTGTAGGTACTCGGCAACTTCCAGGGTCCTTCATGAGATGTTGCAAGTTGGTGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGGATAGCAGTTTCAAGAGTAAAGAGAGGGCAAAGGAGATACTCAAGTTGCACTCTGCGGTTTGGAAGAATTCACCATGTATTCCTGTGCCTCTGCTATCATCCTATCCATCATGA 1230 0.4537 MDEIDVPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQSLLDTFLTPNHTLRRLIQSWCTLNASLGVERIPTPKPPVDSSQIVKLLAEAKKFPDKQLNCLRRLRSIAFEGERNKNCLESAGAIDFLASTMKNNIINIIQQDDSTALISEAAIEVLFHLNPSENQLKNLINNEGIQFLESLFQVLRLGNYQSRAYATMLLKSAFGVADPIQLLSVKTELLVEIMRVLRDQISHQASKAALKLVVELCPWGRNRIKAVEGGAVCVLIELLLDATERRACELILIALDQLCGCAEGRAELLNHAAGVAIVSKKILRVSHVASDRGVRILASICRYSATSRVLHEMLQVGAVSKLCLVLQVDSSFKSKERAKEILKLHSAVWKNSPCIPVPLLSSYPS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1424 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Dod10g1424 409 SUPERFAMILY RING/U-box 3 77 - -
Dod10g1424 409 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Dod10g1424 409 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Dod10g1424 409 PANTHER OS11G0573500 PROTEIN 1 408 - -
Dod10g1424 409 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Dod10g1424 409 CDD RING-Ubox_PUB 10 53 IPR045210 -
Dod10g1424 409 PANTHER WDSAM1 PROTEIN 1 408 IPR045185 GO:0061630
Dod10g1424 409 Gene3D - 95 331 IPR011989 -
Dod10g1424 409 SUPERFAMILY ARM repeat 98 386 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1424 Dod-Chr10 34537874 34539554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1424 1 409 U-box Gene Family AT3G52450 52.982 2.11e-160 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1424 - - gmx:100778012 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1424 10 34537874 34539554 Dod10g1424 10 34537874 34539554 ECH
Dod10g1424 10 34537874 34539554 Dod03g2302 03 53528366 53529487 PCT