Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1404 ATGGAGGGTGCTCCGGGGATGGAAGAGAGTGCAAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTTGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGCATCTGCCTTGAAGCTTTCTGTGATAGTGATCCTTCTACGGTGACAAGCTGCAAGCACGAGTTTCATCTTCAATGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCTATGTGTTGGCAACCCATCAGTCTCAAAGATCCAGCCAGCCAGGAATTGCTTGAAGCTGTGGAAAGAGAGAGAAACATTAGGTTAAATCCACCTAGAAATGCTACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTGCAACACGTCTGTAATTTAGTTATGTTTGGAAGCATATTTGTACTGTTATCATATCATGCATTGTGTGATTGTTGTGACTTCGTGCAGTTGCCAGTTGGAGCACATGATGCTGATCTTGAAGAGCATATAATCCAACACTTAGCTGCTGCTGCAGCAATGGGGCGAGCACGTCACATTGCTAGAAGGGAAGGCCAGAGACACAGGTCATCAGCTCAAGGCCGCCCTCATTTTTTGGTATTTTCGACTCATCCAAATTCACCTGCTGTGGCTCCTGCTTCTTCCTCTCCAACTCACAGCCAGAGGGGAGATGCTGAACCAGCTCCTGCAGATGCTGTCGCCACTCTGTCTCCAACTCCTGCAACTGGAGGAGAATTGCCGCAGCTGACTTTAGTTCCTCCTGTTCAAGCTGACCAGGTTTCTGCTTCAGGATCTGGGTCTACTGCACTCTCTACTGATCACCAAGGACCATCTAACAACAATCGGAGATCTCCTAGCCATTCTTCTCCCAGCAGTCAAGACAGAGGAGGGCCATCAGAATTCCAGTCATTTTCAGAATCTCTGAAGTCTAAACTAAATGCTGTGTCAACAAGATACAAAGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAACACCTCTATGTCTGATCTTGGATCTGAAGTTAGACGTGAAGTTAATGCTGGGATTGCGACTGTGTCACGTATGATGGAACGCCTTGAAACCAGGGATAGTAATAGAAGCAGTAGCAATTCTGCACCAAGTAATTTGGATGATGGTTCAGTTCATGGAGCTAATGATCAGCATTTAACAGAAGGGAGCCGGCTTTTGAGAGACAATGATACAAAAACATCTTGTGCTGCAGGTTCTAGTTCAAATTAA 1260 0.4619 MEGAPGMEESAKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPASQELLEAVERERNIRLNPPRNATIFHHPTLGDFELQHVCNLVMFGSIFVLLSYHALCDCCDFVQLPVGAHDADLEEHIIQHLAAAAAMGRARHIARREGQRHRSSAQGRPHFLVFSTHPNSPAVAPASSSPTHSQRGDAEPAPADAVATLSPTPATGGELPQLTLVPPVQADQVSASGSGSTALSTDHQGPSNNNRRSPSHSSPSSQDRGGPSEFQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNTSMSDLGSEVRREVNAGIATVSRMMERLETRDSNRSSSNSAPSNLDDGSVHGANDQHLTEGSRLLRDNDTKTSCAAGSSSN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1404 419 MobiDBLite consensus disorder prediction 207 222 - -
Dod10g1404 419 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 151 418 - -
Dod10g1404 419 SUPERFAMILY RING/U-box 29 83 - -
Dod10g1404 419 Pfam Ring finger domain 35 76 IPR001841 -
Dod10g1404 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 4 123 - -
Dod10g1404 419 MobiDBLite consensus disorder prediction 364 419 - -
Dod10g1404 419 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Dod10g1404 419 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 4 123 - -
Dod10g1404 419 MobiDBLite consensus disorder prediction 372 388 - -
Dod10g1404 419 MobiDBLite consensus disorder prediction 254 306 - -
Dod10g1404 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 85 IPR013083 -
Dod10g1404 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 151 418 - -
Dod10g1404 419 SMART ring_2 36 76 IPR001841 -
Dod10g1404 419 MobiDBLite consensus disorder prediction 198 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1404 Dod-Chr10 34349687 34356417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1404 33 84 C3H Transcription Factor Family AT4G00335 44.231 6.72e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1404 K19043 - gmx:100780275 603.979