Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1391 ATGACTGAAACTACCGAGGCACCCTCTGATATGACTATGTCTTTGCTTAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGCAACTAGAGGTGGAATCCTTGCAGATGAAATGGGAATGGGAAAGACAATTCAAGCAATAGCCCTTGTCCTTGCAAAACGTGAATTGCAGCAAAGTAGTTCTGCACCTGTCGAACCCCTAACATCACAGACACCATGTTCATCTAGGGTCTTGCCTATGATCAAAGGAACACTTGTCATTTGTCCTGTGATTGCTGTCACTCAGTGGGTTAGCGAGATTGATCGATTTACAATGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAGGAGAGGAAAGAGTAGTGAACAGTTTTTGGAGTATGATTTTGTGATAACTACATACTCTATTGTTGAGTCTGAGTACAGGAAGTATATGATGCCTCCTAAGGAGAAGTGTCAATATTGTGGAAAATCATTTTTGCAGAGCAAGTTATCTTATCATCAGATGCATTATTGTGGGCCTTATCATGTTCGAACAGAAAAACAATCAAAGCAAGTTAAAAAGAAAACAGAAGTCACTAAAGGGAAGAACAAGGAATGTATGAGTAGCAAGAAGTCTTGCAATGAAGATGAGCTGAGCATTGGCATGGAAGATTCAGATACTATACGCAGGGGCATGTCACTTCTACATGCTGTTAAATGGCAGCGGATTATATTGGATGAGGCACACTATATAAAATCCAGACATAGTAACACTGCAAAAGCAGTTCTTACTTTAGAGTCTTCCTACAAATGGGCATTAAGTGGTACTCCCCTTCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTACGGTTCTTGCAAATAACTCCTTATTCGTACTACTTGTGCAAGGACTGTGATTGCAGGACTCTTGATCACAGCTCCAAACAATGTCCAGACTGCACTCACAGTTCTGTTCGACATTTCTGTTGGTGGAACAAATATGTTTCCATACCAATTCAATCCTTTGGGAATGGCGATATTGGAAAAAGAGCCATGATATTGCTTAAACACAAAGTTTTGAAGAACATAATACTAAGGCGCACTAAACTAGGCAGAGCGGCTGATCTTGCACTTCCTCCTAGAATTGTTTTATTGAGAAGGGATTTCTTGGATATAAAAGAGCAAGATTATTATGAATCATTATACAATGAAAGCCAAGCACAATTTAATACATATGTCGAAGCAAATACACTGATGAACAATTATGCTCATATATTTGACCTCCTCACAAGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCGACACAAAGAGGTGGACATGTGGCTAGTAATGCTACTGCTGAACAAGCATGTGGCATTTGTCATGAGCCAGTAGAAGAACGGGTGGTCACCTCTTGTGAGCATATATTTTGCAAGGCTTGCTTGATAGACTTCTCTGCTTCTCTAGGACAAGTGTCATGCCCCTCGTGCTCTCAATTACTTACTGTTGATTTAACTTCCAACAAGGAAGTCGGGGATCAGGCTAACAAAACTACAATTAAGGGTTTCAGATCCTCAAGCATTTTAAACAGAATTCAGCTTGAGAACTTTCAGACGAGCACTAAAATAGAGGCTTTGCGAGAAGAAATAAGATCCATGATTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCTTTGCATAAGTCTGGTGTATCTTGCGTACAATTGAATGGAAGCATGACATTGGCTGCCCGGGATGTGGCCATTAGGAGATTTGCTGACGATCTAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACTGTAGCTTCGCATGTTTTCCTTATGGACCCTTGGTGGAACCCAGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTGAGATTTGTAATCGAGAACACAATAGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGTGTGATACTGGGGGAGGTGGTGGTGATCGTGAGCCTGCTGTTCAAGACGCCGCTGAGGAAGCTGGTGATCGTGACGCTGGATCGGGTGAAGAGAGGGAGGGGCCCAGTGGTGGTGAAGACGGTGGGGGGAACGGTGGGGGTGGTGCTGGGGTCGAGCCTCTACAGCATATCGGAGATCAGGCGCCGCATCTTTGACCTTGAAGCCGGCGTCGTTAACCCCACTGACCAAGTCCTCTTGTCTAAGCACATCCTCGAAGCTTCTCTCATGGGGTTTGTGCTGTTCCTCTCTCTGATGATAGATAGATTGCACCACTACATTCGAGAGCTTCGGGTACTTAGGAAGACCGTGGAGGCTGCTAAGAAACAGAGTCGAGGTTTTGAAGAAGGGAAAAATGGCAGTGCAGAGGAGCACAAAGCATTGATGGAAGAAATTGCCACACTGAAGCCCCAGGTTAAGAAACTGGAATCTGAAAATGAAGTCAAAGAAAGCAGGATTAAGGCCTTGGAAGCAGAGGTGCAAGCTCTTAAGAAGCAATCTGAGGGGTTCCTTTTGGAATATGATCGCCTCTTGGAAGACAATCAGAGTCTTAGGAGTCAGTTGCAGGGCATTGATAAGAGCTCTTCCCATCTTGATGACAAGAAGAGCATGTGA 2742 0.4362 MTETTEAPSDMTMSLLRYQKEWLAWALKQENSATRGGILADEMGMGKTIQAIALVLAKRELQQSSSAPVEPLTSQTPCSSRVLPMIKGTLVICPVIAVTQWVSEIDRFTMKGSTKVLVYHGARRGKSSEQFLEYDFVITTYSIVESEYRKYMMPPKEKCQYCGKSFLQSKLSYHQMHYCGPYHVRTEKQSKQVKKKTEVTKGKNKECMSSKKSCNEDELSIGMEDSDTIRRGMSLLHAVKWQRIILDEAHYIKSRHSNTAKAVLTLESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYLCKDCDCRTLDHSSKQCPDCTHSSVRHFCWWNKYVSIPIQSFGNGDIGKRAMILLKHKVLKNIILRRTKLGRAADLALPPRIVLLRRDFLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQAATQRGGHVASNATAEQACGICHEPVEERVVTSCEHIFCKACLIDFSASLGQVSCPSCSQLLTVDLTSNKEVGDQANKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRSMIERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMTLAARDVAIRRFADDLDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGVILGEVVVIVSLLFKTPLRKLVIVTLDRVKRGRGPVVVKTVGGTVGVVLGSSLYSISEIRRRIFDLEAGVVNPTDQVLLSKHILEASLMGFVLFLSLMIDRLHHYIRELRVLRKTVEAAKKQSRGFEEGKNGSAEEHKALMEEIATLKPQVKKLESENEVKESRIKALEAEVQALKKQSEGFLLEYDRLLEDNQSLRSQLQGIDKSSSHLDDKKSM* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1391 913 SMART helicmild6 581 664 IPR001650 -
Dod10g1391 913 Gene3D - 169 384 IPR038718 -
Dod10g1391 913 Coils Coil 537 557 - -
Dod10g1391 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 523 IPR013083 -
Dod10g1391 913 Coils Coil 799 819 - -
Dod10g1391 913 ProSiteProfiles Zinc finger RING-type profile. 466 506 IPR001841 -
Dod10g1391 913 PANTHER BNAA08G28190D PROTEIN 2 706 - -
Dod10g1391 913 Gene3D - 830 893 - -
Dod10g1391 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 702 IPR027417 -
Dod10g1391 913 Coils Coil 848 882 - -
Dod10g1391 913 SMART ultradead3 11 314 IPR014001 -
Dod10g1391 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 28 296 IPR014001 -
Dod10g1391 913 Gene3D - 17 162 IPR038718 -
Dod10g1391 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 368 IPR027417 -
Dod10g1391 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 550 706 IPR001650 -
Dod10g1391 913 ProSitePatterns Zinc finger RING-type signature. 481 490 IPR017907 -
Dod10g1391 913 Pfam SNF2-related domain 29 443 IPR000330 GO:0005524|GO:0140658
Dod10g1391 913 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 706 - -
Dod10g1391 913 Pfam Zinc finger, C3HC4 type (RING finger) 466 505 IPR018957 GO:0046872
Dod10g1391 913 SMART ring_2 466 505 IPR001841 -
Dod10g1391 913 CDD DEXDc_SHPRH-like 15 368 - -
Dod10g1391 913 Pfam Helicase conserved C-terminal domain 550 664 IPR001650 -
Dod10g1391 913 CDD SF2_C_SNF 548 675 - -
Dod10g1391 913 SUPERFAMILY RING/U-box 456 510 - -
Dod10g1391 913 Gene3D - 391 705 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1391 Dod-Chr10 34161503 34171464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1391 1 701 RAD5 or RAD16-like Gene Family AT1G05120 66.853 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod10g1391 SNF2_N 3.1e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1391 K15083 - gmx:100786366 1131.7