Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1371 ATGCCAGCCGGTATTACGATTCCGGCGAGAAACATGATGCCCTCTATGATTGCAAGGAACGGAAGCTTTGGTGGGTTTGGATCATCGTCTTCAGGAGCATTCTCTCTTGCCCAGATTGAAAACCATAAGGCTTCGGAAACTCAAGGATCCGCAGACATGTTCCAACCAAACATGATGGAAGGTAGCCAGCTGCACCATTTGGACATGGGACAGAACACACCGGAGAGCGATGTCCCCAGAATCCGTGAGGATGAGTTCGACAGTGCCACCAAATCAGGCAGCGAGAACCAAGAAGGTGCATCGGGTGAAGACCAAGACCCTCGCCCCAACAAGAAGAAGCGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAATGCCCGCACCCTGATGACAAGCAAAGGAAGGAACTGAGCCGTGAGTTAGGGTTAGAGCCACTGCAGATCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACACAACATGAGCGGCACGAGAACACGCATCTGAGGACTGAAAACGAGAAGCTTCGAGCGGATAACATGAGGTACAGGGAAGCTCTTAGCAATGCCTCATGTCCCAACTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTTGATGAGCAGCACTTGAGGCTCGAAAATAGCCGCCTAAGAGAAGAGATTGATCGGATTTCCGCTATTGCTGCCAAGTACGTGGGGAAGCCTGTGGGGAGCTACTCACTCGTTTCATCTTCATCTGTTCCTCCACGTCCACTAGAACTTGGGATTGGTGGCTTTGGTGGCCAACCAGACATGGGTGGTAGTACTGGTGATATCTACGGAGCTGGTGATCTTCTGAGGTCAATCAGTGCTCGCACTGAAGCAGACAAACCAATGATAATAGAGCTTGCTGTAGCAGCGATGGAGGAGCTCGTTGGGATGGCACAAATGGGTGAGCCTCTTTGGTTGACCACCCTGGATGGAACCACTGTGCTCAATGAGGATGAATACGTCAGGTCCTTTCCCCGAGGAATTGGCCCTAAACCTACCGGCTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTCATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCCGGTATAGTCTCAAGAGCCATGACTCTAGAAGTGTTATCAACAGGTGTGGCAGGGAACTACAATGGTGCTTTGCAAGTGATGACAGCAGAATTACAAGTGCCTTCACCTCTTGTGCCTACTCGAGAGAGTTATTTTGTGAGGTATTGTAAGCAGCACGCGGATGGGACTTGGGCAGTGGTGGATGTGTCCTTGGACAATTTGCGCCCTAGCCCTTCAGCCAGATGCAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCTAAGGTCATATGGGTTGAGCATGTTAGAAGTGGATGA 1476 0.4986 MPAGITIPARNMMPSMIARNGSFGGFGSSSSGAFSLAQIENHKASETQGSADMFQPNMMEGSQLHHLDMGQNTPESDVPRIREDEFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKTQHERHENTHLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEQHLRLENSRLREEIDRISAIAAKYVGKPVGSYSLVSSSSVPPRPLELGIGGFGGQPDMGGSTGDIYGAGDLLRSISARTEADKPMIIELAVAAMEELVGMAQMGEPLWLTTLDGTTVLNEDEYVRSFPRGIGPKPTGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVRSG* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1371 491 Pfam START domain 306 488 IPR002913 GO:0008289
Dod10g1371 491 SMART START_1 305 491 IPR002913 GO:0008289
Dod10g1371 491 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 66 489 - -
Dod10g1371 491 Coils Coil 491 491 - -
Dod10g1371 491 ProSiteProfiles START domain profile. 296 491 IPR002913 GO:0008289
Dod10g1371 491 CDD START_ArGLABRA2_like 300 488 - -
Dod10g1371 491 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Dod10g1371 491 Gene3D - 349 491 IPR023393 -
Dod10g1371 491 Coils Coil 175 195 - -
Dod10g1371 491 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Dod10g1371 491 Pfam Homeodomain 112 167 IPR001356 GO:0003677
Dod10g1371 491 SUPERFAMILY Homeodomain-like 101 169 IPR009057 -
Dod10g1371 491 Gene3D - 97 186 - -
Dod10g1371 491 MobiDBLite consensus disorder prediction 86 120 - -
Dod10g1371 491 CDD homeodomain 112 170 IPR001356 GO:0003677
Dod10g1371 491 SUPERFAMILY Bet v1-like 296 488 - -
Dod10g1371 491 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 489 IPR042160 -
Dod10g1371 491 SMART HOX_1 110 173 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1371 Dod-Chr10 33906963 33938331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1371 53 488 Homeobox Transcription Factor Family AT4G04890 71.622 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod10g1371 START 8.1e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1371 K09338 - gmx:100809556 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1371 10 33906963 33938331 Dod10g1371 10 33906963 33938331 ECH
Dod10g1371 10 33906963 33938331 Dod03g2237 03 52474518 52483273 PCT