Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1340 ATGCACGTAATGCAAAGCATGAAAACTGAGTTAAAGGGCACGTCCTCCATCTCCTTCCAAAACCACACTGCTCTCTTTAACACACCCCACAGTCCTCTCACAGGAGCAATCAAAGGGTGTCTTGGAAGCCTTGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCAAGTGCCTTGGAGAGCAACGATGTCACCTTGGCTCAACAAGTCATGTGGGTCCTCAACAACGTTGCCTCACCTGTTGGTGACACAAACCAAAGGCTCACCTCTTGGTTCCTGAGGGCATTGATCTCTAGGGCTTCAAAGATTTGTCCCACCGCCATGAACTTCAAGGGAAGCAACACCATTCAGAGGAGGTTGATGACTGTGACCGAGCTAGCTGGGTATGTGGATCTGATTCCTTGGCATAGGTTTGGCTTTTGTGCATCAAACAATGAGATTTTCAAAGCAATTGTTGGGTTCCAAAAGATGCTTTGGCCAAAAGGCCCTGAAGGACCTCCTTCACTTAGAATCACAGTTCCATTTATTAGGCCACCAGTACCACCCTTGGTGAATGTATCAACACAAGAGGTTGGCCTAAGATTAGGGAATTTTGCTAAGTTTAGAGATGTCCCTTTTGAATTCAATGTTATTGGGAGCACTACTCCATTAACACCTTCTGAATTAAGCAATGAATCAACTAGCTTCCATTTTGAGTCACTGTTAAGTCTCTTGAATCCTAATGTGCTAAACCTTAGGGATGATGAGGCCTTGGTCATAAACTGCCAAAATTGGCTGCGATATTTGTCTGATGATAGAAAGGGAAGCCACCAAAACTTCTCTCTCCGTGATGCCTTTCTGAATCTAGTTAAGGGTCTTAACCCCAGGATAGTGCTGTTGGTAGATGAGGACTGTGATCTTAGTTCCCCAAGCCTCACATCAAGAATCACAACATGTTTCAACCATCTGTGGATACCCTTTGATGCATTGGAGACTTTTTTGCCTAAGGACAGTTGCCAGAGGACAGAATTCGAATCCGACATAGGCCAGAAGATTGAGAACATAATAAGCTTTGAAGGGCATCAGAGGATGGAGAGGTTGGAGTCAGGGTTGCAAATGTGCCAAAGAATGAGTAATGCAGGTTACTTGAGCCTTCCATTTTGTGATGAAACAGTTAGGGAAGTTAAGGCATTGCTTGATGAGCATGCTAGTGGATGGGGGATGAAGAGGGAAGAAGGCATGTTGGTTCTCACATGGAAAGGGAACAGCTGTGTGTTTGCCACAGCTTGGGTCCCCAGTGAAATGAGGGATCATATGGGCATGGATGCATGCATATCTTGA 1323 0.4528 MHVMQSMKTELKGTSSISFQNHTALFNTPHSPLTGAIKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASKICPTAMNFKGSNTIQRRLMTVTELAGYVDLIPWHRFGFCASNNEIFKAIVGFQKMLWPKGPEGPPSLRITVPFIRPPVPPLVNVSTQEVGLRLGNFAKFRDVPFEFNVIGSTTPLTPSELSNESTSFHFESLLSLLNPNVLNLRDDEALVINCQNWLRYLSDDRKGSHQNFSLRDAFLNLVKGLNPRIVLLVDEDCDLSSPSLTSRITTCFNHLWIPFDALETFLPKDSCQRTEFESDIGQKIENIISFEGHQRMERLESGLQMCQRMSNAGYLSLPFCDETVREVKALLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPSEMRDHMGMDACIS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1340 440 Pfam GRAS domain family 50 157 IPR005202 -
Dod10g1340 440 Pfam GRAS domain family 164 424 IPR005202 -
Dod10g1340 440 ProSiteProfiles GRAS family profile. 40 425 IPR005202 -
Dod10g1340 440 PANTHER OS05G0500600 PROTEIN 8 426 - -
Dod10g1340 440 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 426 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1340 Dod-Chr10 33589681 33591298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1340 23 426 GRAS Transcription Factor Family AT3G49950 40.603 1.03e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod10g1340 GRAS 1.4e-44 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1340 - - gmx:100802093 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1340 10 33589681 33591298 Dod10g1340 10 33589681 33591298 ECH