Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1335 ATGCCAGGTGTTTGCTTAATTGTTGTTATTGAACTTGAATTGCATGCACATATGTTGGCCAAAGCCCATGGTAAAGGGGATAGATCTAAGTCCCTGGGAAAAGTGCTGGCAAAATGGAAAGAATACAATGCGCAACTCGATTCGCGAAGCGACCCCGATAAGCCAATTCGGAAAGTTCCGGCCAAGGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGCCCGGAGAACTCACGGTGTAACTACAGAGGTGTTAGGCAAAGGACTTGGGGGAAGTGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTTTGGCTAGGTACTTTTCCCACTGCCATAGGAGCTGCTCTTGCGTACGATGAAGCTGCAAGGGCAATGTATGGTTCTTGTGCCCGCCTCAACTTTCCCAATGTTTCGGTGCCCAGATTCTCTGAGGAATCGTCAAAGGATTCCCCAGGTGCAAACCAATCTGGTTCCTCATTGGTTGTGTCAGCAAATACTGAGTCTATGATATCACCGAATAACTCTGGGGTAGGCACAGAAGAAGAGGATGGTGATATGGAACACATTTCCCTATCCTTGAGTGTAAAAGTTGAGAATGTTGAAGGTGAATCAGGGACCAGTTCCTCCCCTCCATCCACTTGA 651 0.4808 MPGVCLIVVIELELHAHMLAKAHGKGDRSKSLGKVLAKWKEYNAQLDSRSDPDKPIRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVPRFSEESSKDSPGANQSGSSLVVSANTESMISPNNSGVGTEEEDGDMEHISLSLSVKVENVEGESGTSSSPPST* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1335 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 185 - -
Dod10g1335 216 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677
Dod10g1335 216 CDD AP2 80 140 IPR001471 GO:0003700|GO:0006355
Dod10g1335 216 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Dod10g1335 216 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Dod10g1335 216 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Dod10g1335 216 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Dod10g1335 216 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Dod10g1335 216 MobiDBLite consensus disorder prediction 47 76 - -
Dod10g1335 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 21 185 - -
Dod10g1335 216 MobiDBLite consensus disorder prediction 144 181 - -
Dod10g1335 216 MobiDBLite consensus disorder prediction 200 216 - -
Dod10g1335 216 MobiDBLite consensus disorder prediction 144 216 - -
Dod10g1335 216 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1335 Dod-Chr10 33500655 33502400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1335 29 170 AP2-EREBP Transcription Factor Family AT2G40340 54.795 1.23e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod10g1335 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1335 - - gmx:100499747 310.842