Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1325 ATGGTGAGAACCCCTTGCATTGATAAAAATGAACTGAGGAAAGGATCATGGACAACAGAGGAAGACTGGAGGTTGATTGCCTATGTTACTAGATACGGCCACTGGAATTGGCACCAACTCCCCAAGTTTGCTGGTCTTGCTAGGTCGGGAAAGAGTTGCAGACTAAGGTGGATGAATTACTTGAGGCCAAATATCAAAATAGGGAGTTACACTCGAGAAGAAGATGAAACTATTATCAAGCTAGTCCAACATCTTGGTTACAGATGGTCTGCCATTGCTTCTCAGCTGCCAGGAAGAACGGACAACGAAATAAAAAACCGCTGGCACACCAATCTCAAGAAGCGATTCCGAGAGAACTCATGCACTCACGGAAAAGCTGAAGTTTCCAACTTAATGAATCACTTGCTAGTTGAACCAACGCCAAAAAATAATATAAATGACCTTTCACAAATCCTTCTATCACCCTCTCAATCCATTGATTCTTGCTCATCAACTACATTGTCACACTCGAGTGAATCTTTTGAAACCACTAATCGTATTGCATCTGCTGGCAACACAAATTTGGTTTTAGAATATGAGTTTGCTTTTCTGAATGAGCCTTTGAGAGAAATTTTCTTGTTGGATGACACCCCGGTCGATTCAATTCCAAACAATACAAATGACCCTTTCCAATTCCTTCTACCAACCTCTCAATCCACCGATTATTGCATTGCTCCGACGCCCTCTTCCATGAGTGAAATCCCTATTACCCCAGATCATACCCCAGTTGTTGGCTACAAAGATTTAGTTCCCGAAGATGAATTTGGTTTCTTAGATGCATTAGAAGAGCCTATGAGTGGAATTTTCCCTTTGGATAACTCCCCAGTTGACCCAGTTGCAAACAATATGATTGACCCTTTCCAAATCCTTCTAGCAAACTCTCATCAATTCGCCTATTGTTGCCCTACTTCTACACCCCCATCCTCGAGTGAATTCTCCATAACCACCAATTATAATCATACCACAACTGTTAGCGACAAAAATTTGATTCCCGAAGATGGGTTTCCTTGTTTGGAGTCATTCGGAGAACCATTGAGCGGAAGCTTCCTGTTGGATCACTCTCTAGTTGATCTTATGCAAAAAAATATCACTGGTCCTTTTCAGAACCTTCCAGCCACATGTCCTTTTCAATCCTCGAGGAAACTGTTTATATTCCCACAAGATGAAACTGTGGTTGCGGAAGATGAATTTGCCCCACAAGAAAGAAGTATCCAGCATACGAGCGGAGCTTTTGTTTTGGAACCCGTGGCAGGTGACACTGCTGACGTTGCAGGTGAAACAGTTATGTGA 1329 0.4244 MVRTPCIDKNELRKGSWTTEEDWRLIAYVTRYGHWNWHQLPKFAGLARSGKSCRLRWMNYLRPNIKIGSYTREEDETIIKLVQHLGYRWSAIASQLPGRTDNEIKNRWHTNLKKRFRENSCTHGKAEVSNLMNHLLVEPTPKNNINDLSQILLSPSQSIDSCSSTTLSHSSESFETTNRIASAGNTNLVLEYEFAFLNEPLREIFLLDDTPVDSIPNNTNDPFQFLLPTSQSTDYCIAPTPSSMSEIPITPDHTPVVGYKDLVPEDEFGFLDALEEPMSGIFPLDNSPVDPVANNMIDPFQILLANSHQFAYCCPTSTPPSSSEFSITTNYNHTTTVSDKNLIPEDGFPCLESFGEPLSGSFLLDHSLVDLMQKNITGPFQNLPATCPFQSSRKLFIFPQDETVVAEDEFAPQERSIQHTSGAFVLEPVAGDTADVAGETVM* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1325 442 CDD SANT 69 112 IPR001005 -
Dod10g1325 442 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 177 - -
Dod10g1325 442 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod10g1325 442 CDD SANT 16 61 IPR001005 -
Dod10g1325 442 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod10g1325 442 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 177 - -
Dod10g1325 442 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dod10g1325 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod10g1325 442 Gene3D - 68 133 - -
Dod10g1325 442 SMART sant 66 114 IPR001005 -
Dod10g1325 442 SMART sant 13 63 IPR001005 -
Dod10g1325 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod10g1325 442 Gene3D - 6 67 - -
Dod10g1325 442 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Dod10g1325 442 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1325 Dod-Chr10 33335267 33354726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1325 1 193 MYB Transcription Factor Family AT2G31180 46.114 3.55e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g1325 Myb_DNA-binding 5.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1325 K09422 - gmx:100778518 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1325 10 33335267 33354726 Dod10g1325 10 33335267 33354726 ECH