Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1323 ATGGTGAGAACCCCTTGTTGTGATAAAAATGGACTGAGGAAAGGTACTTGGACTCCAGAGGAAGACAAGAAGTTGGTCGCCTATGTTACTAGGTATGGCTGCTGGAATTGGCGTTTACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGCAAGAGTTGCAGACTTCGGTGGATGAACTACCTGAGGCCTGATATCAAAAGAGGGGACTACACTCAAGAAGAGGAAGAGACTATTATCAGACTTCACGAAAAGCTGGGCAATAGATGGTCTGTGATTGCTGCAAATTTGCCAGGAAGAACGGATAACGAGATAAAGAACCACTGGCACACCACACTGAAGAGGCGTTTTGAGCACAAGGCAGACTCAGGCACTAGAAGCAATAGAACCGGCAAAGCCAAAGCCTCCAAGTCAAAGAATCATGGCGACTCCCCAATATTAATGGAAGGCAATGATGATAAGCAAATGGAGAGAGATCTTCCAGCTGATGAGAACAGCAACATTGGCCCAATGTCTCCACAGCCATCCTCTACTAGTGGATTCTCTTGCGTAACAACAGAAGCTGAAGCTGCTGCCAGAAACCATGAGAATAGTTTTGTTCCAGAAGATGATGACCTTGCTTTTCTGGATGCTTACAATGAGCCCATGAATGCAGACTTCTGGACAGAACCTTATCTCACGGACGTCTCCTATGTACCTCCTCATTGTGAAGATGCAACTGTGCCCTTGGTGCATGAACCTGAATACTTCCTATCGGATGTTGAATTTTGGACCCACGACAATAGTGTTTACCAGGAATGTGTTGGGGACTTATTCTACTACTGA 822 0.4599 MVRTPCCDKNGLRKGTWTPEEDKKLVAYVTRYGCWNWRLLPKFAGLARCGKSCRLRWMNYLRPDIKRGDYTQEEEETIIRLHEKLGNRWSVIAANLPGRTDNEIKNHWHTTLKRRFEHKADSGTRSNRTGKAKASKSKNHGDSPILMEGNDDKQMERDLPADENSNIGPMSPQPSSTSGFSCVTTEAEAAARNHENSFVPEDDDLAFLDAYNEPMNADFWTEPYLTDVSYVPPHCEDATVPLVHEPEYFLSDVEFWTHDNSVYQECVGDLFYY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1323 273 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod10g1323 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod10g1323 273 CDD SANT 16 61 IPR001005 -
Dod10g1323 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod10g1323 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod10g1323 273 CDD SANT 70 112 IPR001005 -
Dod10g1323 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Dod10g1323 273 SMART sant 13 63 IPR001005 -
Dod10g1323 273 SMART sant 66 114 IPR001005 -
Dod10g1323 273 MobiDBLite consensus disorder prediction 145 160 - -
Dod10g1323 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod10g1323 273 Gene3D - 69 143 - -
Dod10g1323 273 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 237 - -
Dod10g1323 273 Gene3D - 14 66 - -
Dod10g1323 273 MobiDBLite consensus disorder prediction 166 180 - -
Dod10g1323 273 MobiDBLite consensus disorder prediction 114 180 - -
Dod10g1323 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod10g1323 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1323 Dod-Chr10 33269619 33271198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1323 1 123 MYB Transcription Factor Family AT2G31180 67.480 6.40e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g1323 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1323 K09422 - gmx:100815765 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1323 10 33269619 33271198 Dod10g1323 10 33269619 33271198 ECH