Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1322 ATGGCGAGAACCCCTTCCTTGGACAAAAGTGGAATAAAGAAAGGTACTTGGACTCCGGAGGAAGATGCGAAGCTAATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAGGTTTGCAGGTCTGGCAAGGTGTGGAAAGAGTTGCAGATTGAGATGGTTGAATTACCTCAAGCCCGACGTCAAAAGAGGGAACTACACTAAAGAAGAAGAAGACCTTATTGTCAGACTCCACCGCAAGTTGGGCAGCAGATGGTCTGTCATTGCAGCTAATTTACCGGGAAGAACAGATAACGACATAAAGAACCATTGGAACTCCAACCTCAAGAAGCGCTTCCAACGGAAATCAAAAGTCACACATGAAAATGTCAAGGACACTACAAAACCAAATGTCTCTGGCTCCAAGCAGGACACAGAGTCAGAACAGAACAATTTTGCCTTGAAGCTCGAAGGTACTGCGAGCGATCTCCGTGGCTGTGCAGTCTTCTTCCCCGCGCGGTCTCTCCCTTCCCCACGTGGTCACCGTCCAGCCTCGCGCACGCCGCTGCCATCTCCGTTAGGCGCAAGCTGCTGCCATCTCCGTCAGGCGTCCCTGTTCGCGGTGTCTGTCCCTGCACGGGTTCCGTTCAAAGCAACCCCCTTTCCTGTTTCTTCAGCTGCAATCTCAGTTCCTGGTATACCATATTTTGGTTTTCGTTTTGGTTTTGGTTTTTTCTGGTAA 732 0.5014 MARTPSLDKSGIKKGTWTPEEDAKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWLNYLKPDVKRGNYTKEEEDLIVRLHRKLGSRWSVIAANLPGRTDNDIKNHWNSNLKKRFQRKSKVTHENVKDTTKPNVSGSKQDTESEQNNFALKLEGTASDLRGCAVFFPARSLPSPRGHRPASRTPLPSPLGASCCHLRQASLFAVSVPARVPFKATPFPVSSAAISVPGIPYFGFRFGFGFFW* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1322 243 MobiDBLite consensus disorder prediction 115 145 - -
Dod10g1322 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod10g1322 243 Gene3D - 13 66 - -
Dod10g1322 243 CDD SANT 69 112 IPR001005 -
Dod10g1322 243 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod10g1322 243 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod10g1322 243 CDD SANT 16 61 IPR001005 -
Dod10g1322 243 Gene3D - 69 148 - -
Dod10g1322 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 142 - -
Dod10g1322 243 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod10g1322 243 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod10g1322 243 SMART sant 66 114 IPR001005 -
Dod10g1322 243 SMART sant 13 63 IPR001005 -
Dod10g1322 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod10g1322 243 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod10g1322 243 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 142 - -
Dod10g1322 243 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1322 Dod-Chr10 33236553 33241464 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1322 1 139 MYB Transcription Factor Family AT3G01140 56.028 4.80e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g1322 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1322 K09422 - rcu:8287581 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1322 10 33236553 33241464 Dod03g2176 03 51238087 51239870 PCT