Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1318 ATGGGAAGAGCACCTTGCTGTGACAAGAATGGCCTCAAAAAAGGTCCATGGACACCAGAGGAAGACCTCAAGCTCATCAACTACATCCAGATTCATGGACCTGGAAACTGGCGATCCCTCCCCAAGAATGCTGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTAGATGGACAAATTACCTGAGACCCGACATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAGACCATCATTCAGCTGCACAGTATCTTGGGAAACAAGTGGTCAGCTATAGCAGCTCGTTTGCCAGGAAGAACCGACAATGAGATAAAGAACTACTGGAACACACACATAAGGAAGAGGCTGCTTCAAATGGGGATTGACCCGGTTACTCATGCTCCACGCCTTGATCTACTTGACATGTCTTCCATGCTAAGATCAGCTTTGGGGAACTCATCAATTCTGAATCTGCAAGGCCTATTGGGTGCTCAGGCATTGGTGAACCCGGATTTTTTAAAGCTTCTTGCCACTGCCACATTATTGTCATCATTGAAGAATGAGAACACAACGGAGATGGCTAGTTCACAGAATCAACAACAAATCAATGCTGGGAATTGGCAAGTACAAAGCCAAATTGCCCCATCATCACTTGAGTTTGTGAATCAGTTTCAAATGCCAACACAAAGCACCGACGTGAATCGCATATCGGGTAATTATAATAATAATAACAATATGATGAGCGTGATGAGCCCTTCAAGTTCTCCAGAGAATTCAATTCCATCTAATTATCTTGGGGAGAACCTTATGTCTCAACAAAATCAAGTTGATTTGCTCCAGAACCCGGAATTGTTACATTACCTGAACAATGCTAATAACAACCAAAACATAGGCTATGAACCTGTTCTGTCTACGCCTATGTCAACCCCTTTGAATTCGTCATCTACCTATGTGAATAGCAGCACGGAGGAAGAGAGGGACACCTATTGCAGTGAAGTTTTCAACTTTGAGATTCCAGAGAGTCTTGACATTGACGACTTCTTGTAA 1026 0.4366 MGRAPCCDKNGLKKGPWTPEEDLKLINYIQIHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLQMGIDPVTHAPRLDLLDMSSMLRSALGNSSILNLQGLLGAQALVNPDFLKLLATATLLSSLKNENTTEMASSQNQQQINAGNWQVQSQIAPSSLEFVNQFQMPTQSTDVNRISGNYNNNNNMMSVMSPSSSPENSIPSNYLGENLMSQQNQVDLLQNPELLHYLNNANNNQNIGYEPVLSTPMSTPLNSSSTYVNSSTEEERDTYCSEVFNFEIPESLDIDDFL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1318 341 CDD SANT 69 112 IPR001005 -
Dod10g1318 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod10g1318 341 CDD SANT 16 61 IPR001005 -
Dod10g1318 341 Gene3D - 69 116 - -
Dod10g1318 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 336 - -
Dod10g1318 341 SMART sant 13 63 IPR001005 -
Dod10g1318 341 SMART sant 66 114 IPR001005 -
Dod10g1318 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod10g1318 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod10g1318 341 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod10g1318 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod10g1318 341 Gene3D - 13 66 - -
Dod10g1318 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod10g1318 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod10g1318 341 PANTHER TRANSCRIPTION FACTOR MYB41 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1318 Dod-Chr10 33087615 33088874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1318 1 341 MYB Transcription Factor Family AT4G21440 47.721 1.89e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g1318 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1318 K09422 - gmx:100812189 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1318 10 33087615 33088874 Dod03g2169 03 51045190 51046795 PCT