Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1268 ATGGACTTGCATCAGTATTTTGATGAGGCTATGCCCCAGATGGATTCCTTTGAAGATAAATCATCTCTGGAAATGTGGAAATGTGATAGTGATGGCATTGCTGATTCTGATAGACATGCCTCCTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCTGTGGTCACTCTTTGTGGTCATCTTTACTGCTGGCCCTGCATATACAAGTGGCTTGATTTCCAAAGCAACTCTTCTGAAAATGGAGAGAAGCAGAAGTCACAATGTCCAGTTTGCAAGTCAGAAATTTCTCAATCCTCTCTTGTTCCATTATATGGCCGAGGCCAATCCACTTCGTCGTCAGAAGACAAGTCTCACAATGTAGGCATTGTCATACCGCGGAGACCCCTTGGTCCAAGATCATCTAGCAATACAACTGTTCCCCAACCTTCTTCTCATGTCTATCATTCCCGTTATCCAGATCATCTGCAACAATTCAACCCGATTCCAGGCAGTTACACATCGCCTATGCTTAACACAGATGGTTCACTAGCACATGCATTCAATACATCATATGGAGTCTTTGGCGAGGCCATATATGCAAGGGTATTTGGAAACCAGATGACAAACGTATACACATACCCTAATTCATATCATCTTTCAGGGAACACTAATCCAAGGACCAGAAGGCGTCTAATGGAAGCTGATAAGTCACTCAGTAGAATATGTTTTTTCCTCCTTTGTTGCGCAGTTTTGTGTCTTCTCTCATTCTGA 753 0.4329 MDLHQYFDEAMPQMDSFEDKSSLEMWKCDSDGIADSDRHASFDCNICLECVQDPVVTLCGHLYCWPCIYKWLDFQSNSSENGEKQKSQCPVCKSEISQSSLVPLYGRGQSTSSSEDKSHNVGIVIPRRPLGPRSSSNTTVPQPSSHVYHSRYPDHLQQFNPIPGSYTSPMLNTDGSLAHAFNTSYGVFGEAIYARVFGNQMTNVYTYPNSYHLSGNTNPRTRRRLMEADKSLSRICFFLLCCAVLCLLSF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1268 250 ProSiteProfiles Zinc finger RING-type profile. 44 93 IPR001841 -
Dod10g1268 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 250 - -
Dod10g1268 250 MobiDBLite consensus disorder prediction 105 119 - -
Dod10g1268 250 SUPERFAMILY RING/U-box 38 105 - -
Dod10g1268 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dod10g1268 250 SMART ring_2 44 92 IPR001841 -
Dod10g1268 250 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Dod10g1268 250 Pfam RING-type zinc-finger 44 90 IPR027370 -
Dod10g1268 250 CDD RING-HC_AtRMA_like 42 94 - -
Dod10g1268 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 111 IPR013083 -
Dod10g1268 250 MobiDBLite consensus disorder prediction 131 146 - -
Dod10g1268 250 MobiDBLite consensus disorder prediction 105 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1268 Dod-Chr10 32570004 32572918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1268 29 250 C3H Transcription Factor Family AT4G28270 36.522 5.28e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1268 K10666 - gmx:100785491 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1268 10 32570004 32572918 Dod10g1268 10 32570004 32572918 ECH