Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1251 ATGGATCATCATCGCCAGCAAGGAAGTGAACCTTCTGCTCCAACCAAAGTCGAAAGAAGGATCACAGAGAGAAATAGGAGAAAAAATATGAAGGACCTCTATTCCAGACTCAACTCTCTCCGCCCTGACTATAACCCCAGGGAAATGTTACCTTTGCCTGATCAAATTGACGAGGCCATCAACTACATCAAGAGCCTGGAGACAAAGGTGAAGACTGCCAAGGAGAAGAAAGAAGGGTTGTTAATGGCAAGGAAGAGATCTCGGGGTAGCAGCTCCAGTGCTTTTGAGACAAAACGAAGCCTTAAATCTCCAAAAGTCGAGATTCATGAAGTGGGTTCCTCGCTAGAAGTGATTTTGACGTGTGAGCTTGATAACCAATTCATTTTCAATGAAATTATTCGCATACTACATGAAGAGAACATTGAGGTCATTAGTGCCAATTCTTCAATGGCTGGAGATTCAATGATTAACGTTTTGCATGCACAGATTCCCCAGTCTAGCTATCAATTCGGAGCCGCCAAAGTAAGTGATAGACTAAAACGGTTTATGGACGAATCCGTCAGTGGTGTGGAGCTAGAGTTGTTGGATTCTGAAATCGAGAATGAGATGTGGGAGCTTCCAGATCTTTCAGCAAGCAAGGGTCTTCCTAATCCTTTGTAA 660 0.4348 MDHHRQQGSEPSAPTKVERRITERNRRKNMKDLYSRLNSLRPDYNPREMLPLPDQIDEAINYIKSLETKVKTAKEKKEGLLMARKRSRGSSSSAFETKRSLKSPKVEIHEVGSSLEVILTCELDNQFIFNEIIRILHEENIEVISANSSMAGDSMINVLHAQIPQSSYQFGAAKVSDRLKRFMDESVSGVELELLDSEIENEMWELPDLSASKGLPNPL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1251 219 MobiDBLite consensus disorder prediction 16 31 - -
Dod10g1251 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 190 IPR015660 GO:0003700|GO:0006357
Dod10g1251 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Dod10g1251 219 Coils Coil 56 83 - -
Dod10g1251 219 MobiDBLite consensus disorder prediction 1 31 - -
Dod10g1251 219 Pfam Helix-loop-helix DNA-binding domain 17 67 IPR011598 GO:0046983
Dod10g1251 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 81 IPR036638 GO:0046983
Dod10g1251 219 Gene3D - 9 95 IPR036638 GO:0046983
Dod10g1251 219 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 12 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1251 Dod-Chr10 32273947 32275330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1251 17 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.932 4.86e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g1251 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1251 - - gmx:100817883 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1251 10 32273947 32275330 Dod10g1251 10 32273947 32275330 ECH