Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1239 ATGGAAGGGTTGGAGACAAAGATGGCGGTGCAGGTGAAGAGGGAGGCTGTGGTGGATGAGGAAGATCAGAAGAAGAAGGTGGCATGTGTTGGTGTGTCCACAGGGAAGAAAGGTTCTGGTGGTGGTGGTGGCATGCTGCGGTGTTGTCAAGCGGAGATGTGCAACGCTGATCTTCACGATGCCAAGCAGTATCACAGGAGACACAAGGTGTGTGAGTTCCACGCCAAGGCCCAGGTGGTGCTTGTTGCTGGCATGCGACAGCGCTTTTGTCAGCAATGCAGCAGGTTCCACGAGTTAGCTGAATTTGATGACACAAAAAGAAGTTGCCGCAGGCGTTTGGCTGGACACAACGAAAGGCGAAGAAAGAACACCGAGTCTCAAGCAGAAGGCTCCACCCGCAAAGGAACAGGCCCTCAGCTGAAGGACATTGCTTGCGGGGATGCTAGGGGCAGAATTCAGATAACAATACAAGAAAATGCAGCTTACAAACATTTCCAGATAAGATGA 507 0.5168 MEGLETKMAVQVKREAVVDEEDQKKKVACVGVSTGKKGSGGGGGMLRCCQAEMCNADLHDAKQYHRRHKVCEFHAKAQVVLVAGMRQRFCQQCSRFHELAEFDDTKRSCRRRLAGHNERRRKNTESQAEGSTRKGTGPQLKDIACGDARGRIQITIQENAAYKHFQIR* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1239 168 ProSiteProfiles Zinc finger SBP-type profile. 46 123 IPR004333 GO:0003677
Dod10g1239 168 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 168 IPR044817 GO:0003677
Dod10g1239 168 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 20 168 - -
Dod10g1239 168 Gene3D - 40 110 IPR036893 GO:0003677|GO:0005634
Dod10g1239 168 MobiDBLite consensus disorder prediction 113 141 - -
Dod10g1239 168 Pfam SBP domain 49 122 IPR004333 GO:0003677
Dod10g1239 168 SUPERFAMILY SBT domain 47 126 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1239 Dod-Chr10 32158946 32161200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1239 35 154 SBP-box Gene Family AT1G53160 57.377 5.46e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod10g1239 SBP 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1239 - - ccaj:109810441 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1239 10 32158946 32161200 Dod10g0972 10 27726838 27728179 ECH
Dod10g1239 10 32158946 32161200 Dod10g1239 10 32158946 32161200 ECH
Dod10g1239 10 32158946 32161200 Dod03g0441 03 5396016 5399342 ECH
Dod10g1239 10 32158946 32161200 Dod04g1451 04 36118694 36121062 ECH