Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1238 ATGCCTGCCCAGAAGCGTTCCTTCCCCGAACCTCTCGACGATGGGGACTCCTCCCACCTCTTCCCTCACCGCCACCCCAACAAGCACCACCACCGCAACCTCAAACCCCTCGAAGAAGAAAAGGACGATGATGTTGTTGAGGACCAGCACGAGGAAGAGGAGGAGCCAAAGCAAGAGCAAGGAGATGTAGAAGAAGATGAACAGCAACAACAAGAAGAAGAAGCAGAAGAAGAAGACGATGAGGAAGATGAAGATGAAGATGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGCAGAGCAGCAACAGAGCCACGACAAGGATAAGCCAGATGATTCTGACGACACCCCATCTTCTGGTTCTGAAGGAAAACCCGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAAGATGTTCAATGTCCAATTTGCCTTGGCATTATTAAGAAAACAAGAACTGTTATGGAATGTTTGCACCGGTTCTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCCCTTATTGCTGCTTTGTATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAAAAGAACCGGAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGTTCAACGGCAGTCTGAAGCACTGGTTAAGAGACGTAAAGATTCACCAAGTGGATTTGGGACAAGATCACAGCGTAATCAACGAAATGTTTCTAGGAGACAAAACCCAGTGATTGATATTCAAGGGTCTGAAGATAATGAGGAGGAAAATGACAATAATGAGAAGGACTCATCTTCTGCTGATGAGCGGGGTACAGAGCTCCGACAAAGAAGGCGAAAGAGATGGACCAGAGTTCGTCCCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGAGGTGTAGAAAGTGACTTGGATATCAGTAGAGATAATCGAGGAATTTCAAGGCAGGCGTCAAAACCTCGAAAGCTTACCTGGGGAAGGGGTGGTTTTAGAAGTCACACACGGCATGGCAGTGGTGGTGGTAGCAATAGCAAAAGTTCTCGCAGCCGAGTGTCTAAGCTGGCTGATTATCTTCGAAATTTGGATGAAAACACGAATGAGTTAGATGTCCATCTCATGCTTGTTTCTCTGGACAAACAAAGTACACCATTGCAGCAGCCACACCTTTGCTGTCGCCCAACTTTGTCTGTCAAGCACCTATGCGAATATGTTGCTCATCAAACACCATTACCAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGTTGTGGCGCAAATTGTGAGAAGTCAGCTGATGAGACTTCGGCCTTGATATGTGATGAGCTAACAACGCTGGTTATAGATCCATCCAAAGATGAATTGGAAATTTTGCAGGGTCATGAATCTCTATCAGGGCTTAGTTCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAGGAGGCACTATAG 1554 0.4537 MPAQKRSFPEPLDDGDSSHLFPHRHPNKHHHRNLKPLEEEKDDDVVEDQHEEEEEPKQEQGDVEEDEQQQQEEEAEEEDDEEDEDEDEEDEEEEEEEAEQQQSHDKDKPDDSDDTPSSGSEGKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSGFGTRSQRNQRNVSRRQNPVIDIQGSEDNEEENDNNEKDSSSADERGTELRQRRRKRWTRVRPSQPSSSMASPDGGGVESDLDISRDNRGISRQASKPRKLTWGRGGFRSHTRHGSGGGSNSKSSRSRVSKLADYLRNLDENTNELDVHLMLVSLDKQSTPLQQPHLCCRPTLSVKHLCEYVAHQTPLPVEEVEILAVKGCCGANCEKSADETSALICDELTTLVIDPSKDELEILQGHESLSGLSSKCISKREHLILAYRRKEAL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1238 517 PANTHER OS11G0578200 PROTEIN 35 515 IPR044592 -
Dod10g1238 517 MobiDBLite consensus disorder prediction 238 380 - -
Dod10g1238 517 MobiDBLite consensus disorder prediction 101 118 - -
Dod10g1238 517 Pfam Zinc finger, C3HC4 type (RING finger) 139 179 - -
Dod10g1238 517 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Dod10g1238 517 MobiDBLite consensus disorder prediction 331 345 - -
Dod10g1238 517 Coils Coil 61 104 - -
Dod10g1238 517 MobiDBLite consensus disorder prediction 41 100 - -
Dod10g1238 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 203 IPR013083 -
Dod10g1238 517 SUPERFAMILY RING/U-box 129 194 - -
Dod10g1238 517 Coils Coil 206 237 - -
Dod10g1238 517 ProSiteProfiles Zinc finger RING-type profile. 140 180 IPR001841 -
Dod10g1238 517 MobiDBLite consensus disorder prediction 253 275 - -
Dod10g1238 517 CDD RING-HC_RING1_like 140 180 - -
Dod10g1238 517 SMART ring_2 140 179 IPR001841 -
Dod10g1238 517 MobiDBLite consensus disorder prediction 365 380 - -
Dod10g1238 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 35 515 - -
Dod10g1238 517 MobiDBLite consensus disorder prediction 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1238 Dod-Chr10 32145789 32152215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1238 133 203 C3H Transcription Factor Family AT3G23060 35.135 5.08e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1238 K10695 - gmx:100776547 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1238 10 32145789 32152215 Dod10g1238 10 32145789 32152215 ECH