Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1236 ATGAGCAGTGTTTGTAATTCTGATCAGCACCACCACAAGTTCCACCCTTCCCAACAACTCCTCTCTCCCAAAAAGTCCCTAATAAGGGAAATTGACATCCCACCAAGGAAGCTCCTCACCCGTCGCTCCGCCCAATCCTCCGCCTTGGACCGTGGTGCCGGCATGTTTTCCGACGACTCCCTTTTCCACAAATTCCTCCCTTACAACAACCCTTCAGCCGACTCGGACTCCGGCTCTGATACCGACGACCCCTACTCCTCCGACCACTTCCGAATGTACGAGTTCAAGGTCCGCCGGTGCACTCGCAGCCGGAGCCACGACTGGACTGACTGCCCCTTCGCCCATCCGGGCGAGAAGGCACGCCGCCGTGACCCGCGGCGGTTTCACTACTCTGGAACTGTGTGTCCGGAGTATCGCCGCGGCTCATGTAGCCGCGGGGATAACTGTGATTTCGCTCACGGCGTCTTTGAATGCTGGCTGCATCCCGCGAGGTACAGAACCGAAGCATGCAAAGACGGCAAGAACTGCAAGAGAAAAGTGTGCTTCTTCGCGCACACACCGAAACAACTCAGGATCCTGCCAGTCACAATGAATTCTTCAAATGACACGTCTCCATGCAAGACGAACAAGCTCAACTGTTGTTTGTTTTGCCACCACTTTGGTGATGGTGCTGCTAATTCTCCAACTTCAACCCTTTTATGTATGTCACGTTGTTCTCCACCTCTGTCGCCGTCTTCCTCTGCCGCGTCGCCGCCGTTGTCTCCGGTGAATAGGGGTCTCGCCGGTTTCTCTCTACAGTGCATGCCGTGGTAG 813 0.5547 MSSVCNSDQHHHKFHPSQQLLSPKKSLIREIDIPPRKLLTRRSAQSSALDRGAGMFSDDSLFHKFLPYNNPSADSDSGSDTDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGSCSRGDNCDFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPKQLRILPVTMNSSNDTSPCKTNKLNCCLFCHHFGDGAANSPTSTLLCMSRCSPPLSPSSSAASPPLSPVNRGLAGFSLQCMPW* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1236 270 SUPERFAMILY CCCH zinc finger 128 158 IPR036855 GO:0046872
Dod10g1236 270 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Dod10g1236 270 Pfam CCCH-type zinc finger 134 154 IPR041367 -
Dod10g1236 270 MobiDBLite consensus disorder prediction 1 26 - -
Dod10g1236 270 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 30 251 - -
Dod10g1236 270 PANTHER UNKEMPT FAMILY MEMBER 30 251 IPR045234 -
Dod10g1236 270 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Dod10g1236 270 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Dod10g1236 270 Gene3D - 129 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1236 Dod-Chr10 32134546 32135358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1236 82 191 C2H2 Transcription Factor Family AT5G07500 67.273 1.23e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod10g1236 zf-CCCH_4 1.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1236 K23047 - gmx:100801371 337.421