Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1233 ATGCGAAGCCCGTTATCATCCTCAATGGCGGTGAAGGAGAAGCTGAGCCCGAAGAACAAGGACCCAAACAACAATGCCAAGGAGGTTCACTACAGGGGCGTGAGGAAGAGGCCTTGGGGCCGTTACGCCGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGGACCTTTGACACCGCCGTGGAAGCCGGCATGGCCTATGACGCCGCCGCCAGGCAGTTCCGCGGCCCGAAGGCCAAGACCAACTTCCCTTCCCCTCACGACGAAAACGACGTCGTCGCAGCAAGCCACTGTAACATCATAGAGTCCTCAGGAACAAACGCCCCGGAGAGTAAGGTCACGCGCCCTACGGACGCGGGTCCGGTCGTGGTGGATCGGTTGTTGTTCCCGTTTCTTCCCTACCGTGGTGTTGAGGGCGTGGTTGCACCGGTGCGCCCGGTTTTGTTGAGTGAACCGGCTGGGAGAGTTGAGTTTGTTGGAGAGCGTTGTCCTTTCCGGTTCGATCCGGAACCGGTTGGGTTTGACGAGCTGTGTGGTGATGGTGGGGCCCACAGTGACTCTGATTCATCCTCCGCCGTTGATTGTAAACCGAAAAGAGTGCTTAACCTCGATCTAAACCTCGCTCTGCCCATTGACGCCTAG 651 0.5899 MRSPLSSSMAVKEKLSPKNKDPNNNAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAVEAGMAYDAAARQFRGPKAKTNFPSPHDENDVVAASHCNIIESSGTNAPESKVTRPTDAGPVVVDRLLFPFLPYRGVEGVVAPVRPVLLSEPAGRVEFVGERCPFRFDPEPVGFDELCGDGGAHSDSDSSSAVDCKPKRVLNLDLNLALPIDA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1233 216 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Dod10g1233 216 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Dod10g1233 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 110 - -
Dod10g1233 216 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Dod10g1233 216 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Dod10g1233 216 MobiDBLite consensus disorder prediction 1 32 - -
Dod10g1233 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 110 - -
Dod10g1233 216 MobiDBLite consensus disorder prediction 14 32 - -
Dod10g1233 216 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Dod10g1233 216 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Dod10g1233 216 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Dod10g1233 216 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1233 Dod-Chr10 32111322 32112607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1233 8 214 AP2-EREBP Transcription Factor Family AT5G44210 44.762 1.29e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod10g1233 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1233 K09286 - qsu:112001675 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1233 10 32111322 32112607 Dod10g1233 10 32111322 32112607 ECH
Dod10g1233 10 32111322 32112607 Dod03g0450 03 5477469 5479287 ECH