Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1225 ATGCTTGCCGTGTCAACTTTGAGGAGCAACAAAGATGAAAGCCGATTAGAGATGGATAACTTCTCGATTGGCGCCGAAGACTTTGCTGAATTATCCGAAGGGAACTTGTTGGAAAGCATCAACTTCGATGATCTCTTCGAGTTCGAGGGAATCAACGATGGAGACGTGTTGCCGGATCTGGAAATGAACCCTGAAATGTTTGCTGAGTTCTCACTCAGTAGTGGAGGTGAGGAATCTGAGTTGACCTCATCAATTTCAGTGGTGAATAGCAAACCTGGTGATCATGATGGTAGTGGTGGTGGGAGCAATAGTAGTAAACCCGAGGAAGGTAATAAATCAGCTTCTTCTTCAGATTCGGGTGCGAATTCTGGGTCAAGTAAAGGGGAGGAGATAGTGAGCAAAAGAGATGAATCCGTGGTGCTGAATCCATCACCTAATAAGGACAGTGAGAAAGGAAGAAAATCATCATCATCAGCTCAGTCAAAGAATAATCCTCAAGGAAAGAAAAAGGTCAAGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAGGCAGTGGAGCTGCTGGGAGTAGATAAGGCAGTGCCTTCAAGGATTTTGGAGGTTATGGGAATTGACTGTCTCACCCGCCATAACATTGCTAGCCACCTTCAAAAATATCGATCGCATAGGAAACATTTGCTAGCGCGAGAAGCTGAAGCAGCAAGCTGGAGTCAACGGAGGCAATTGTTTGGTGCAGGAGGTGCAGCAGGTAGAGGAGGAGCAGGGAAGAGAGACGTGAGCCCTTGGCTTGCACCAACCATTGGATTCCCTCCGATGACACCAATGTCCCATTTTAGACCCTTGCATGTCTGGGGGCACCCAACGATGGACCAATCCTTTATGCACGTGTGGCCTAAACCTTCACTACCACCGCCACCAGCAGCAGCTTGGGTTGCTGCTCCTTCTCCACCACCTAATTCAGACCCTTCATATTGGCACCATGCTCAGCACCAAAGGGCTCCAAACACGCTAACCCCAGGAACACCTTGTCTTCCACAACCTCTGACAACAACGGGGAAATACAATAACATGCAGAGATTTGGGTCTGCGACTGTCCCGGGTATCCCAACACCACCACCACCACCACCCAATGCCCTGTACAAAGTGGATCCAGGCATTGGCGTTCCCGCTAGGCAACCTGGCCCCCGGCCCCTCTTTGACTTCCATCCGTCAAAGGAAAGTGTAGATGCTGTCATTGGTGATGTTTTGTCAAAGCCATGGTTGCCACTGCCTCTTGGCCTTAAAGCTCCAGGGCTTGAAAGTGTGATGGGTGAGTTACAAAGACAAGGAATTCCAAAAGTCCCACCCTCGTGTGCTTGA 1368 0.4942 MLAVSTLRSNKDESRLEMDNFSIGAEDFAELSEGNLLESINFDDLFEFEGINDGDVLPDLEMNPEMFAEFSLSSGGEESELTSSISVVNSKPGDHDGSGGGSNSSKPEEGNKSASSSDSGANSGSSKGEEIVSKRDESVVLNPSPNKDSEKGRKSSSSAQSKNNPQGKKKVKKVDWTPELHRRFVQAVELLGVDKAVPSRILEVMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGAGGAAGRGGAGKRDVSPWLAPTIGFPPMTPMSHFRPLHVWGHPTMDQSFMHVWPKPSLPPPPAAAWVAAPSPPPNSDPSYWHHAQHQRAPNTLTPGTPCLPQPLTTTGKYNNMQRFGSATVPGIPTPPPPPPNALYKVDPGIGVPARQPGPRPLFDFHPSKESVDAVIGDVLSKPWLPLPLGLKAPGLESVMGELQRQGIPKVPPSCA* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1225 455 Gene3D - 168 229 - -
Dod10g1225 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 227 IPR017930 -
Dod10g1225 455 MobiDBLite consensus disorder prediction 1 20 - -
Dod10g1225 455 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 455 IPR044825 GO:0003700|GO:0045893
Dod10g1225 455 MobiDBLite consensus disorder prediction 68 175 - -
Dod10g1225 455 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 455 - -
Dod10g1225 455 MobiDBLite consensus disorder prediction 75 128 - -
Dod10g1225 455 SUPERFAMILY Homeodomain-like 172 228 IPR009057 -
Dod10g1225 455 Pfam Myb-like DNA-binding domain 174 223 IPR001005 -
Dod10g1225 455 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 172 225 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1225 Dod-Chr10 32071085 32076413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1225 1 312 G2-like Transcription Factor Family AT5G44190 41.945 6.97e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod10g1225 Myb_DNA-binding 4.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1225 - - gmx:100790591 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1225 10 32071085 32076413 Dod10g1225 10 32071085 32076413 ECH