Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1219 ATGGATGATGGAGAAGTTTCAAACGGTTTTCCTCACCAGAACCAGACTGGTTCTAACAATCCTCCTGTCTTGAAAAGGAAGAGAAACCTACCTGGAAACCCAGATCCTGAAGCAGAAGTCATAGCCTTATCACCAAAGACCCTCATGGCCACAAACAGGTTCGTTTGTGAAATTTGCCTGAAGGGTTTCCAAAGGGATCAGAATCTTCAGCTCCATCGACGTGGACACAACCTTCCCTGGAAGCTCAAGCAAAGGACAAGCAAAGAACCAAGGAAGCGAGTTTATGTGTGCCCAGAAAAGACCTGTGTCCACCACCACCCTTCGAGGGCTCTTGGGGACTTAACTGGGATAAAGAAGCATTTTTGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAGACCTGTGGCACCAGAGAATACAAATGTGACTGTGGAACCATCTTTTCAAGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTAGCAGAAGAAACAGCTAGGGTAAACGCGGCATCACACATAAGCAACACACTAGGGGGTAACATGGGTTACAGCCTCATGCAAACTCCCTTGGGGCCTAACATGGCAACTAATTTTTCTTCAATTTTCAAGCCAATTTCAAGCACTGAGGAAACAAGTAATAACCAGACATCAAGGGGCCTATCCCTTTGGATGGGTCAAGCATCTCAGGCTCATGAGACAATGACTAATGGTGACAATAATTTGCATGAAATTCCTCCACTTGGGTCAGTTACAAGCCCAGCAGCAGCAATATATGGTGGGAACCCACTTGTTTCATGCTCGAATCCTCCACCCTCTAATTATCAGCTTAATTGGGTGTTTGGAAATAAGCTCTCATCAAATAATGCAAATCAAGAGCTAATTGCTAGCAATGCTTCACTTCCACTGGTGAATATTGTTAAGGAAACTGCAAACCAGCTTATCAGTGTTCCTTCCTTGTATAGCTCCCAACACCAATCCCACCAAACAAATTCAGCAAACATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAGCAACTTCAAATGACCCATCATTCCTTGCGAACTTAGGTTTGAAATGCAGTAGCAACCAAGGTCAAGATGGAAACAAATTTTGTGGCATGTACAGTTCAAGTTCACTACTCACAAGTCTTGGGAGTGAGCCAGAGAGCTCTACAGGTGATTTGACACAAATGCCCCCTTCAAAAAGAATGCACGTAGTTCAAAATGAAGAGAGTGCAGGGGGACAAACAAGGGATTTTCTTGGCGTTGGCGTGCAAACTATTTGCCACCCTTCATCAATTAGTGGGTGGATTTGA 1389 0.4492 MDDGEVSNGFPHQNQTGSNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASHISNTLGGNMGYSLMQTPLGPNMATNFSSIFKPISSTEETSNNQTSRGLSLWMGQASQAHETMTNGDNNLHEIPPLGSVTSPAAAIYGGNPLVSCSNPPPSNYQLNWVFGNKLSSNNANQELIASNASLPLVNIVKETANQLISVPSLYSSQHQSHQTNSANMSATALLQKAAQIGATSNDPSFLANLGLKCSSNQGQDGNKFCGMYSSSSLLTSLGSEPESSTGDLTQMPPSKRMHVVQNEESAGGQTRDFLGVGVQTICHPSSISGWI* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1219 462 MobiDBLite consensus disorder prediction 8 23 - -
Dod10g1219 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Dod10g1219 462 PANTHER F-BOX ASSOCIATED PROTEIN 1 453 - -
Dod10g1219 462 MobiDBLite consensus disorder prediction 1 36 - -
Dod10g1219 462 SUPERFAMILY beta-beta-alpha zinc fingers 53 150 IPR036236 -
Dod10g1219 462 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Dod10g1219 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 453 - -
Dod10g1219 462 Gene3D Classic Zinc Finger 87 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1219 Dod-Chr10 31998253 32001939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1219 20 462 IDZ Gene Family AT1G03840 53.479 7.71e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1219 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1219 10 31998253 32001939 Dod10g1219 10 31998253 32001939 ECH