Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1192 ATGGAAATGGAAGCTTTTGCCCCAGAGAGGGTTAGTGATGGTACTTTTCAAGTGAGTTCCGGTGTGATTGGAAGTGGGTATGGTTCATCTTCTTCTATGGTTTTGGATAGGGAGAAAGGGGAGCTCGTGGAGGCCCCTGTCAAATTGGAGCGAAAAGGTGTGTCCCCTGAGAGAAGCATTGAAGCTTTGAAGAACCATAGTGATGCTGAGAGGAGAAGGAGAGCAAGAATCAATGCACACCTTGATACCCTTCGCACTGTCATTCCTGCTGCTAAGAAGATGGACAAAGCATCCTTATTGGCTGAGGTTATTAGACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCCTGTGAAGGCTTAATGATACCAAAGGACAATGATGAAATCAGAGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATCAGGGCATCTCTATGCTGTGAATACAAACCTGGCTTATTGTCCGATATAAGACAAGCACTTGATGCACTTCAACTTATGATAATTAGGGCAGAGATTGCAACCTTAGGAGGCAGGATGAACAATGTCTTTGTGATAATTAGCTGCAAAGAACATAACTTTGAAGATGCCGAATACCGTCAGTTCCTGGCTGGCTCAGTCCACCAAGCTCTTAGATCTGTATTGGATAGATTTTCGGTTTCTCAGGACATCTTAGGATCCAGAAAGAGAAGGAGAATTTCTATATTCAGTTCATCATCTCTAGGAGATTTTTTGTGA 753 0.4276 MEMEAFAPERVSDGTFQVSSGVIGSGYGSSSSMVLDREKGELVEAPVKLERKGVSPERSIEALKNHSDAERRRRARINAHLDTLRTVIPAAKKMDKASLLAEVIRHLKELKTNAAQACEGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALQLMIIRAEIATLGGRMNNVFVIISCKEHNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILGSRKRRRISIFSSSSLGDFL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1192 250 Gene3D - 57 118 IPR036638 GO:0046983
Dod10g1192 250 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 250 - -
Dod10g1192 250 SMART finulus 67 116 IPR011598 GO:0046983
Dod10g1192 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 113 IPR036638 GO:0046983
Dod10g1192 250 CDD ACT_UUR-ACR-like 149 220 - -
Dod10g1192 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Dod10g1192 250 PANTHER TRANSCRIPTION FACTOR BHLH30 1 250 IPR045847 GO:0003700|GO:0006355
Dod10g1192 250 SUPERFAMILY ACT-like 149 225 IPR045865 -
Dod10g1192 250 Pfam Helix-loop-helix DNA-binding domain 65 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1192 Dod-Chr10 31677354 31680097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1192 48 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.286 7.40e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g1192 HLH 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1192 - - gmx:100783322 395.586