Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1184 ATGGATCCCAGCAACAATCAAGGCAGCCCGTCGTTTCCGCCGGTTTGTAAATATGATGTGTTCATCAGCTTCAGGGGTCCTGACACCCGTGGCTGTTTTGTTGATCATCTCTACAATCATCTAATCAGAAAAGGCATTTTTGTCTTCAAAGATGACGAGAGGCTTGAGAAAGGAGAATCCATTTCATCACAACTTATACAAGCAATAGAAGGTTCACGGATTTGCCTTGTTGTCTTCTCGAGAACCTATGCTCTCTCGAAGTGGTGTTTGGACGAAATGGCCATTATAGCCGAATGCAACAGAGAATTGGAACACAAAGTTTTCCCAATTTTTTATCATGTGGATCCATCTCATGTGCGAAATCAAAATGGCGACTACAAGAAGGCTTTTGATTCGCATGCAGATGAATTCAAGGAAAATCCTAACAAGGTTGATCGGTGGATGAAGGCGATGAAGGAGTTGGCGAATTTGGCTGGTTGGGATATAAGAAGTGGAGACAAAGAGTGGGGCAAAATTGACGATATTGTACAAAAAAGCAAAGCCTTCAAAACATTCTCTCCACACAAGAATCGTGAGGAGCTTATTCCTGATATATTGAAATATACTCAATGTCTTCCATTAGCAATTCAAGGATTAGCTTCTTTCTTGGGTCCCCGAGATAATACTCAATGGAAAGAAGCCCTGAAGCGATTGGCGAGAAATGATGCTCCCAACAAAATCATGGATGTGCTTAGCTTAAGTTACGAGGGATTAGGGAATATAGAAAAAGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAAAGAGTGGACTATGTTACACGAATTTTAGATTGTTGTGGATTAGATCCAGGTATTGGAATTCCAGTTATAATTGAGAAATCACTTCTAACCATTAGAAATGACGAAATCCATATGCATGAAATGTTAGAAGACTTGGGAAAGGGCATTGTTCGGGGACATTTTCCTAGAGGATCATGGAGTAGATTGTGGCTTTATGAAGATTTTCATGATGTCATGACATCACAAACGGGAACAAACAATGTTGAAGCCATAGTTCTAGATCAAAAAGCTGATGTATCCAAATACAGCAAGTTGAATGCTAAAGAATTTTCAAGAATGAAGAGTCTTAAATTGCTCATATTACATCATCAGAACTTTTCAACAAATCTCAATTTTCTTTCCAATAGTCTGCATTATCTTACTTGGCATGGCTACCCGTTCACTTCTTTGCCACCAAAGTTTGAGCCAAGTAGACTTGTTGAGCTGAATATGCCTAATAGCAATATCATCAGTCGACTATGGGAAGGCATCAAGCGTCTCCCAAATTTGAAAAGGATGGATTTGAGCAACTCCAAATATCTTGAGGAGACACCCAATTTTCAAAAGATGCGAAATCTGGAGCGGCTTGATTTTACGGGATGCACAAACCTAGTGTCGGTTCACCCATCAATCTCACGGCTACGTCTGCTTGCTTTCTTGAGTTTGCAAAATTGTTGTAGTCTGGTCAGCCTTGATCTGTGCAGATACAAGGAACCCACATTCGAGAATAAAGCAAGGAGATTGTCACATTTATGCAACCTAGACTCTCTGAGAGTTTTACGACTCTCTGGCTGCACGAAGCTTGAAACGACGCCAGATTTTAGGGGGCTTCCAAAGCTTGAGTACCTTGATTTTAAGCAATGTTTGCCCAGCAACATTTATGGTTTGACGTCTCTTCAAACTCTGGATTTAGAAGGTTGCTTGAAATTGATGGATCTTCCCCTGCCATCTAAAGTCGTGCGTGTCTCCGAGCTAGAATCTTTGATAGTTTTGGACCTTGGCTTCTGTAATCTAACTACCATCCCTAATGCTATTGGAGATTTGAGGTGTTTGGAAAGACTAAATCTAGAGGGAAACAAGTTTACTACACTACCCAGTGGCATGGAGAAGCTACTCAGCCTAGCATATTTAAATTTGGCGCACTGCCATGAGCTTCAAGGCTTGACTACACTCCCATCACAACATGCTTCATCAGGTGGAAGGTATTTTGAAACAGAATCTGGATCTCGTAATCATAGATCAGGATTGTATATTTTCGATTGCCCCAAGTTAGCTTACCCGAATGATCGAAGTCCAGGGAGGATTGACTATTCTAATGGGTGGTTCAATCATCAATTTGAAGGAGATTCAATAATAAGGATAGTGGACTTTGATGCTGTCACTGACAACTGGATTGGCTTTGCCTTTTATGCATCATTTGAGGCAAACCCTCCTTCATCAATTTTAATTGATTCGTCTTCCTTGTTTTTATTGCCACATCCTTTGTGCCTCTCTTTTGAAACTGAACAAGCAGAAGAAACATTCAGTATGCCCTTTTGTTTGGACCTGGCCACTCGTCGGAACCATCTTTGGGTGATTTATATCTCTCGACCACATTGCCATTTTGTGAAATCAGGAGCGCATATCTCATTTAAAGCGCACGCACATTTGAAGATTAGGAATTGGGGTTTACGAATACTATTGCAAGAGCAAGTAGGGCAAGAATGGTCTGATTTTCTTAAGAAACCACGGATGGCGTTTAATTATGTTCGAGAAAACAGAGGCAGTTCAGTGCCTAAAGTTCAGCTTCCGTATAACTGGCTTGTTACTGATGAAGAGGAACGTGAAAACATAGAAGCCAAGGGCAAAGAAAATGATCTCTCAAATTTTGAAGGAGAAGTGAAAGATCTTGAGTCAAAAAAGAATCAATTTGAAGGGCAGCTGAAGGAGGATGAGTTTAAAAAGAAGCAATATGAAGCATTAATAAATTCATTTGAAGATGAAAAAATATTAGATCCAGCAAAACTCATATTGGATATAATAAATAACCCTGTGGTTCTACAATTTGATGAGAAGGGAGACAAAGTTGTGCTTTTAGATGATAGCCACATCTTTCTTCAAGAACAGCTGATGAGTATCTCACCACATATTAAGCCTCATGTTAGAGGAGAGGCATTGAAGCTAGCAGTTGATTTGAAAGCTGACATGAAACCAAGTGCTGAATATTCTTTTGTGGTTCTGGGTTTCCTGCTTATTTTGTCAATTTATGGATTAGTTTCTTCTTTTGATGAAGATGAAGTACTAAGGCTTTTCAAAATTGCTGCTTGGCACAAGCAAGTTGTAGACCTGTTTCAGATGCTTGGTTTTCTAGATAAAATCTCTGGTATGTTGATTGAAAACTATCTTGTTTAG 3216 0.3971 MDPSNNQGSPSFPPVCKYDVFISFRGPDTRGCFVDHLYNHLIRKGIFVFKDDERLEKGESISSQLIQAIEGSRICLVVFSRTYALSKWCLDEMAIIAECNRELEHKVFPIFYHVDPSHVRNQNGDYKKAFDSHADEFKENPNKVDRWMKAMKELANLAGWDIRSGDKEWGKIDDIVQKSKAFKTFSPHKNREELIPDILKYTQCLPLAIQGLASFLGPRDNTQWKEALKRLARNDAPNKIMDVLSLSYEGLGNIEKEIFLHIACFFKGERVDYVTRILDCCGLDPGIGIPVIIEKSLLTIRNDEIHMHEMLEDLGKGIVRGHFPRGSWSRLWLYEDFHDVMTSQTGTNNVEAIVLDQKADVSKYSKLNAKEFSRMKSLKLLILHHQNFSTNLNFLSNSLHYLTWHGYPFTSLPPKFEPSRLVELNMPNSNIISRLWEGIKRLPNLKRMDLSNSKYLEETPNFQKMRNLERLDFTGCTNLVSVHPSISRLRLLAFLSLQNCCSLVSLDLCRYKEPTFENKARRLSHLCNLDSLRVLRLSGCTKLETTPDFRGLPKLEYLDFKQCLPSNIYGLTSLQTLDLEGCLKLMDLPLPSKVVRVSELESLIVLDLGFCNLTTIPNAIGDLRCLERLNLEGNKFTTLPSGMEKLLSLAYLNLAHCHELQGLTTLPSQHASSGGRYFETESGSRNHRSGLYIFDCPKLAYPNDRSPGRIDYSNGWFNHQFEGDSIIRIVDFDAVTDNWIGFAFYASFEANPPSSILIDSSSLFLLPHPLCLSFETEQAEETFSMPFCLDLATRRNHLWVIYISRPHCHFVKSGAHISFKAHAHLKIRNWGLRILLQEQVGQEWSDFLKKPRMAFNYVRENRGSSVPKVQLPYNWLVTDEEERENIEAKGKENDLSNFEGEVKDLESKKNQFEGQLKEDEFKKKQYEALINSFEDEKILDPAKLILDIINNPVVLQFDEKGDKVVLLDDSHIFLQEQLMSISPHIKPHVRGEALKLAVDLKADMKPSAEYSFVVLGFLLILSIYGLVSSFDEDEVLRLFKIAAWHKQVVDLFQMLGFLDKISGMLIENYLV* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1184 1071 Pfam Frigida-like protein 939 1064 IPR012474 -
Dod10g1184 1071 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 194 IPR044974 GO:0006952
Dod10g1184 1071 Pfam Leucine Rich Repeat 421 440 IPR011713 -
Dod10g1184 1071 SUPERFAMILY L domain-like 368 665 - -
Dod10g1184 1071 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Dod10g1184 1071 SMART LRR_typ_2 623 646 IPR003591 -
Dod10g1184 1071 SMART LRR_typ_2 600 622 IPR003591 -
Dod10g1184 1071 Gene3D - 182 252 IPR042197 -
Dod10g1184 1071 Coils Coil 888 936 - -
Dod10g1184 1071 SMART till_3 17 157 IPR000157 GO:0007165
Dod10g1184 1071 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 181 441 IPR044974 GO:0006952
Dod10g1184 1071 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 442 664 - -
Dod10g1184 1071 Gene3D Ribonuclease Inhibitor 516 592 IPR032675 -
Dod10g1184 1071 Gene3D Ribonuclease Inhibitor 360 515 IPR032675 -
Dod10g1184 1071 Pfam TIR domain 17 186 IPR000157 GO:0007165
Dod10g1184 1071 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 181 441 - -
Dod10g1184 1071 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 442 664 IPR044974 GO:0006952
Dod10g1184 1071 Gene3D - 15 181 IPR035897 -
Dod10g1184 1071 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 194 - -
Dod10g1184 1071 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 160 IPR035897 -
Dod10g1184 1071 Gene3D Ribonuclease Inhibitor 593 678 IPR032675 -
Dod10g1184 1071 SUPERFAMILY "Winged helix" DNA-binding domain 238 340 IPR036390 -
Dod10g1184 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 262 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1184 Dod-Chr10 31603968 31613090 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1184 197 672 WRKY Transcription Factor Family AT4G12020 31.737 4.35e-47 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1184 - - var:108332841 683.715