Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1117 ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGATTACGACGGGTTGATCGACGACATCCCCGTTCCCGACGGCCCCTTCACCGTCTCCCCTTCCCCCTTCACCTGGCCTCCCCCTCACACTCCCCACCAATTCAATTCTAATGCCCCCTCCAACTCCAATCTCCGTGTTGAAACTGATGGCTCATCCGGGGATTCTGATGGTCTCAAGGAGCCTGGTCCGAAGAAGAGGGGCAGATCTGATTCATGTGCTCCCTCGAGCTCCAAGGCATGTCGGGAGAAGTTGCGGAGGGATAAGCTGAATGACAAGTTTGTTGAATTAGCTTCCATCCTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCTATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGAGGTGAAGCCCAGAAGTTGAAAGACTCAAATGTGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAACGAACTTCGCGACGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGATCAGCAGTTGAAATCTATGAATGCTCAACCTGGTTTCTTGCCACCCCCTCCGGCAATCCCTGCCGCATTTGCTCCACAAGGTCAAGCCCCTGGCAACAAGTTGGTGCCTTTTATCAGTTACCCAGGAGTTGCCATGTGGCAATTTATGCCTCCAGCTGCTGTGGATACTTCACAGGATCATGTACTCCGCCCACCAGTTGCCTAA 738 0.5176 MVSPENSNWLFDYDGLIDDIPVPDGPFTVSPSPFTWPPPHTPHQFNSNAPSNSNLRVETDGSSGDSDGLKEPGPKKRGRSDSCAPSSSKACREKLRRDKLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNVSLQEKIKELKAEKNELRDEKQRLKAEKEKLDQQLKSMNAQPGFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1117 245 MobiDBLite consensus disorder prediction 21 95 - -
Dod10g1117 245 MobiDBLite consensus disorder prediction 26 44 - -
Dod10g1117 245 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 245 - -
Dod10g1117 245 CDD bHLH_AtILR3_like 89 164 - -
Dod10g1117 245 PANTHER BHLH TRANSCRIPTION FACTOR 1 245 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Dod10g1117 245 SMART finulus 90 141 IPR011598 GO:0046983
Dod10g1117 245 Coils Coil 132 187 - -
Dod10g1117 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 154 IPR036638 GO:0046983
Dod10g1117 245 Gene3D - 87 164 IPR036638 GO:0046983
Dod10g1117 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983
Dod10g1117 245 MobiDBLite consensus disorder prediction 45 61 - -
Dod10g1117 245 MobiDBLite consensus disorder prediction 63 78 - -
Dod10g1117 245 Pfam Helix-loop-helix DNA-binding domain 88 135 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1117 Dod-Chr10 30500322 30503141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1117 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.636 1.93e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g1117 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1117 - - jre:109014401 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1117 10 30500322 30503141 Dod03g1949 03 43625856 43629761 PCT