Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1094 ATGGGGACTAAGGCAAAGAAAGCTATGAACAAGAACACGAGGAAGAATTTGAATTTGAATTTGAACAAGGCTAATGCTACCAAGAAGCCACCATCATCTGCTTCCACCAACAAATCAGACGGTCCTGATTTTTTGCCGTTGGAAGGTGGTCCTGGTCGCAGACCCCCACCCGAGCAGAAGCCGCTGGAGAGCGCTTCCACCGTTTTGTATGTCGGTAGGATTCCGCATGGCTTCTTTGAGAACGAGATGCAAGGGTTTTTTGGACAATTTGGAACCATCAAGAGATTGAGAATAGCTAGAAATAAAAGGACGGGAAGATCAAGACATTTTGGGTTCATTGAATTTGAATCTCCTGAGGTAGCAAAAGTTGTAGCTGATACTATGCACAATTATCTTCTTTTTGAACACCTTCTACAAGTCCACTTGGTACCTCCTGAGAATGTTCATCCAAAATTATGGAGAGGTTTCAATTACCGGCACAAGCCATTGGATGCAGTCCAAATTGAACGAGAGCAACATGACAAGGAAAGAACACTGGAAGAGCACAAGAAGTTGGTGGAAAGGATTTTGAAGCGTGACAATAAACGACGAAAAAAGATGGAGGCTGCTGGCATTGATTATGAGTGCCCTGAGATTGTGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGAAGACTAG 684 0.4357 MGTKAKKAMNKNTRKNLNLNLNKANATKKPPSSASTNKSDGPDFLPLEGGPGRRPPPEQKPLESASTVLYVGRIPHGFFENEMQGFFGQFGTIKRLRIARNKRTGRSRHFGFIEFESPEVAKVVADTMHNYLLFEHLLQVHLVPPENVHPKLWRGFNYRHKPLDAVQIEREQHDKERTLEEHKKLVERILKRDNKRRKKMEAAGIDYECPEIVGNIQPAPKKIKFED* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1094 227 Coils Coil 165 188 - -
Dod10g1094 227 CDD RRM_NIFK_like 68 141 - -
Dod10g1094 227 MobiDBLite consensus disorder prediction 12 40 - -
Dod10g1094 227 MobiDBLite consensus disorder prediction 1 64 - -
Dod10g1094 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Dod10g1094 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 136 IPR000504 GO:0003723
Dod10g1094 227 Gene3D - 2 150 IPR012677 -
Dod10g1094 227 SUPERFAMILY RNA-binding domain, RBD 52 156 IPR035979 GO:0003676
Dod10g1094 227 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 15 226 - -
Dod10g1094 227 PANTHER - 15 226 - -
Dod10g1094 227 SMART rrm1_1 68 141 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1094 Dod-Chr10 29857602 29859830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1094 67 140 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 1.67e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1094 K14838 - gmx:100778780 315.079