Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1087 ATGAGACAAGCAGGTGCATATTCAGGGTTACTATGCGGTGGCATATCAGGAAAGACAGGACCTCACTCTTTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCTGGGGAAGATGTCAAGATGATATCTGGGGAGTCCCCTATTGTTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTCACCAGAAGGTCATGGATCATGGCCATCCAAGGCAAAAGGAGAACCTTGCACAAAGAGGATGTGGCATCTGCTGTTATAGCCACAGATATCTTTGACTTCTTGGTCACTTTGGTCTCCAATTCTGGCAGCACTGTAGTTGGTGAAGCCAATAATGCTGCCACTGTTTTGGAAATGGAAACATTGGAGTACTCTTAA 381 0.4567 MRQAGAYSGLLCGGISGKTGPHSLPLARIKKIMKKSGEDVKMISGESPIVFSKACELFIEELTRRSWIMAIQGKRRTLHKEDVASAVIATDIFDFLVTLVSNSGSTVVGEANNAATVLEMETLEYS* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1087 126 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Dod10g1087 126 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Dod10g1087 126 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 108 - -
Dod10g1087 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Dod10g1087 126 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1087 Dod-Chr10 29724801 29725181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1087 22 118 CCAAT-HAP5 Transcription Factor Family AT5G63470 59.794 3.44e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dod10g1087 CBFD_NFYB_HMF 8.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1087 - - adu:107462326 209.534