Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1068 ATGGAAGTGGACCCCATGGATTTGCTCCGATCAAACCTTTCCCGTGTTCGCATCCCTGAACCCACCAATCGCATCTACAAGCAAGAATGCTGTTTGTCCTTCGACACTCCCAAGTCAGAAGGGGGGTTGTTCATCGACATGTTCACTTTCCTTGCCTTTGGGAAGGACGGTGTGGGTTGGAATTTCGAGAAGACTGGTAATCCTGTTTATTTGCATATAAAGAAGACCAAGAAGTTGGTTCCGGAAGACAGGCCTTCAAAGAAACCAACCCGTTTGGCCATAGGTGTTGATGGGGGATTTGATAACATTGAACCTGAATATGAAGAAACTCATAGTATAGTCATATTGCCTGACTATGTATCCCTTCCATTCCCTTCTGTGGAATTGCCAGAGAAGGTAAGGTTGGCTGCAGATGCTATCCTACTAGCTGAGGGTGCTGAACGGAAGGAACAAGTTGCAGCTTGGACTGCTGATAAGAAATTAGTTAGTGCCTATGCAATGGAGTTACCGCAGATTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAGTGTGCTGAGTGTGACAAGACAGACAATCTGTGGCTAAATCTGACTGATGGAAGGATTCTTTGTGGGAGGAGAAATTGGGATGGAACTGGTGGAAACAACCATGCTGTTGAACATTATAAGAAGACAGGCTACCCTCTTGCTGTAAAGCTTGGGACTATCACTGCTGATTTAGAAGCAGCAGACGTTTACTCCTATCCAGAGGATGACAGTGTCTTGGACCCAGTTTTAGCACAGCATCTGGCCTTTTTTGGCATTGACTTCTCATCATTGCAAAAGACTGAAATGACAACTGCTGAAAGAGAACTTGACCAAAATACCAATTTTGATTGGAATCGAATCCAAGAAAGTGGTCAGGAAATCGAACCAATTTTTGGACCTGGATATACAGGATTGGTCAATCTTGGAAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTGTTTACAACACGGTCATTCTCTTCAAGGTACTATATAAACCAAAGTCTAAAGAAGGCATTTGAGACGGCTCCTGCCGATCCCACTGTTGACTTGAATACACAGTTGACAAAACTGGCACATGGTCTACTATCTGGTAAATATTCCAAGCCAGCAGATGAGAATGATGAGAGTGTAAACGTTGCTTCTTCAACGATGACCCCTAAACAGGAAGGGATACCCCCACGTATGTTCAAAGCTGTGATTGCTGCCAGCCATCCTGAATTTTCATCCATGCGTCAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTCGATCAAGTTGAACGAGCTAATCCTGGGAGAACTGAACTGGATCCTGCAAGGAGTTTCAAGTTTGGTATTGAAGATCGAATCATGTGTTCATCTGGAAAAGTTGCATATAATAGAAGGGATGACTACATCCTTTCTCTTAATATCCCATTGCATGAAGCAACTAACAAAGAAGAAGTAGATTTGTTTCGCAAACTGAAAGCAGAGAAACTTTCTGAAGGGAAAGAAGTGTCTGACAATGAGATTGTACGTTCAAGAGTTCCTTTAGAAGCTTGCCTTAGAAGCTTCTCAGCTCCTGAGGAGATACATGATTTTTACAGCACTGCTTTGAAAACTAAGACAACAGCAGTGAAGACGGCTGGCCTGACATCATTCCCTGATTACCTTGTGTTACACATGCGGAAATTTGTAATGGAGAAGGAATGGATACCCAAAAAGCTTGATGTGTATATAGATGTTCCAGATATCATAGATATTAATCATATGCGCAGCAAGGGTCATCACCCGGGGGAAGAGCTGTTACCAGATGGGGAACCCATCGAGGAGGATTTAAACCAACCTTCAGCCAATGAAGACATTGTCGCCCAGCTGGTTTCTATGGGCTTTAACCAGCTTCATTGTCAGAAAGCAGCTATAAACTCCTCAAATGCTGGAGTAGAAGAGGCAATGAATTGGTTACTATCTCACATGGATGACCCAGATATTGACAATCCTATTTCAAAAGGGTATGGCTCTGATAGTGTTGATCAATCGAGTGTTGATACTCTCATTTCATTTGGATTTCCAGAAGATGTTGCTCGGAAGGCACTGAACGCATCGGGGGGTAACATTGAGAAAGCAACGGAGTGGATATTTAACAATCCTGATGCATCAGTTACCAGTATGGATGCTACTGCATCAAACTCTACATCTGATCCAAGTGATACCAACTTACCGGATGGAGGAGGAAAATATCGACTTATTGGATTTGTTAGCCACATTGGAACCTCGACGCATTGTGGTCACTATGTCGCCCACATTTTGAAAGAACGTAGATGGGTTATTTTTAACGATGACAAGGTTGCGGTTTCCGTTAATCCTCCTAAGGACATGGGCTATCTTTATTTTTTCGAGAGGATTGATGTTTGA 2430 0.4292 MEVDPMDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPKSEGGLFIDMFTFLAFGKDGVGWNFEKTGNPVYLHIKKTKKLVPEDRPSKKPTRLAIGVDGGFDNIEPEYEETHSIVILPDYVSLPFPSVELPEKVRLAADAILLAEGAERKEQVAAWTADKKLVSAYAMELPQIDNGVVIPPSGWKCAECDKTDNLWLNLTDGRILCGRRNWDGTGGNNHAVEHYKKTGYPLAVKLGTITADLEAADVYSYPEDDSVLDPVLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEIEPIFGPGYTGLVNLGNSCYLAATMQVVFTTRSFSSRYYINQSLKKAFETAPADPTVDLNTQLTKLAHGLLSGKYSKPADENDESVNVASSTMTPKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERANPGRTELDPARSFKFGIEDRIMCSSGKVAYNRRDDYILSLNIPLHEATNKEEVDLFRKLKAEKLSEGKEVSDNEIVRSRVPLEACLRSFSAPEEIHDFYSTALKTKTTAVKTAGLTSFPDYLVLHMRKFVMEKEWIPKKLDVYIDVPDIIDINHMRSKGHHPGEELLPDGEPIEEDLNQPSANEDIVAQLVSMGFNQLHCQKAAINSSNAGVEEAMNWLLSHMDDPDIDNPISKGYGSDSVDQSSVDTLISFGFPEDVARKALNASGGNIEKATEWIFNNPDASVTSMDATASNSTSDPSDTNLPDGGGKYRLIGFVSHIGTSTHCGHYVAHILKERRWVIFNDDKVAVSVNPPKDMGYLYFFERIDV* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1068 809 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 808 - -
Dod10g1068 809 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 258 IPR001607 GO:0008270
Dod10g1068 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 258 IPR013083 -
Dod10g1068 809 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 752 770 IPR018200 GO:0004843|GO:0006511
Dod10g1068 809 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 313 807 IPR028889 -
Dod10g1068 809 Pfam Variant UBP zinc finger 16 78 IPR041432 -
Dod10g1068 809 Gene3D - 659 727 - -
Dod10g1068 809 Gene3D - 623 658 - -
Dod10g1068 809 SUPERFAMILY Cysteine proteinases 309 808 IPR038765 -
Dod10g1068 809 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 314 329 IPR018200 GO:0004843|GO:0006511
Dod10g1068 809 Pfam Ubiquitin carboxyl-terminal hydrolase 313 804 IPR001394 GO:0004843|GO:0016579
Dod10g1068 809 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 681 721 IPR015940 -
Dod10g1068 809 ProSiteProfiles Zinc finger UBP-type profile. 161 271 IPR001607 GO:0008270
Dod10g1068 809 Pfam UBA/TS-N domain 624 660 IPR015940 -
Dod10g1068 809 Pfam UBA/TS-N domain 683 718 IPR015940 -
Dod10g1068 809 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 808 - -
Dod10g1068 809 CDD UBA1_atUBP14 624 668 - -
Dod10g1068 809 SUPERFAMILY RING/U-box 164 271 - -
Dod10g1068 809 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Dod10g1068 809 CDD Peptidase_C19B 314 805 - -
Dod10g1068 809 CDD UBA2_atUBP14 685 722 - -
Dod10g1068 809 Gene3D Cysteine proteinases 306 809 - -
Dod10g1068 809 SMART uba_6 683 720 IPR015940 -
Dod10g1068 809 SMART uba_6 624 662 IPR015940 -
Dod10g1068 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 113 IPR013083 -
Dod10g1068 809 SUPERFAMILY UBA-like 670 723 IPR009060 GO:0005515
Dod10g1068 809 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Dod10g1068 809 PIRSF UBP 6 808 IPR016652 GO:0004843|GO:0016579
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1068 616 670 C2H2 Transcription Factor Family AT1G04850 36.364 4.46e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1068 K11836 - gmx:100805602 1375.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1068 10 28977654 28985646 Dod10g1068 10 28977654 28985646 ECH