Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0998 ATGGCTGAGTTCACAGAATTGCTCCCCTTAGGGGAACAAATTGATGTCTTGGTGCATATGTATCAGCATATAATCACTTTTGATATTGAAACTTCTGTCATTTCTTGTGTCATAATCACATTGTTCTTCTTCATCTTCTATCAAATCTTGAACGGTTTGTTCTTTTGGTTCTTGAAAGTTAGGCCAGATGATGAATTACATGATCTTGAAGAAGGGACTTCCCTAGCTTATGGTGCATATGGATATGGGGTATCATCATCTCACCATGTTACCATCCTTCAAGATCTTACCCATGCAAATAATATGGAGGAGGCTAATCGGGCAATGGGGGCTACACTTGAAGAAGAAGAAGAAGAAGAAGATTTTGATGAGAAAAGAGGCCAAAAGCTTAGAGCTTCAAATAAATTACCTCCATTGGTAAACTATGGAATGCATAAACTGAAAAGGGCCTGTGGTGATTGTGCCATTTGCTTGGAGAATTTCGAAGCTGGCCAATTTTGTCAAGTATTTCCTGTGTGCAAGCACATTTTTCATTCAGATTGTATAGATAACTGGTTGCAGAGGAAATCAACCTGCCCAATATGTCGTAGTAGCATCATGTAG 603 0.3897 MAEFTELLPLGEQIDVLVHMYQHIITFDIETSVISCVIITLFFFIFYQILNGLFFWFLKVRPDDELHDLEEGTSLAYGAYGYGVSSSHHVTILQDLTHANNMEEANRAMGATLEEEEEEEDFDEKRGQKLRASNKLPPLVNYGMHKLKRACGDCAICLENFEAGQFCQVFPVCKHIFHSDCIDNWLQRKSTCPICRSSIM* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0998 200 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 200 - -
Dod10g0998 200 PANTHER - 22 200 - -
Dod10g0998 200 SUPERFAMILY RING/U-box 153 199 - -
Dod10g0998 200 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Dod10g0998 200 SMART ring_2 154 195 IPR001841 -
Dod10g0998 200 CDD RING-H2_PA-TM-RING 153 196 - -
Dod10g0998 200 Pfam Ring finger domain 153 196 IPR001841 -
Dod10g0998 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 200 IPR013083 -
Dod10g0998 200 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0998 Dod-Chr10 28032209 28032811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0998 127 199 C3H Transcription Factor Family AT2G18670 39.726 3.15e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0998 - - gmx:102660073 236.498