Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0997 ATGAGTTCGGTTTCTCAAACCTTTGCACCACAAGCATCCTCAGACCCTTCTCTCACATTTTCAAATTTTATTGCCCATGCCGCCAATGTGATTTTAATCTTGTTATTATCTCTTTTTATGGCCACCATACTTTCAACAATAGTTGTTCTCCTTCTATTAAAGTTTTGTGAATACATATCTGATGCTCTTCTTGAAACACTTGATGATGATATTGAAGATGGAAGAGTAAGGACATTGGTGGTTAGATCTTCCTTGACATACCAAGGTGCTTTGAACCAGATAAGCGGTAGTAGGGAAAGGCTACAAACATTTCTACAAGCTTATGAGATGAGATCATTTCACAAACGACGGCACTCACAAAAACTTTTGCCGCCCCATGTTATTTATGGACAAGATGATGAGTTCAGATCATTTTGTAGTGATTGTGTCATTTGTTTGGAGAACTTTATCATTGGTGAGTCCTGTCAAGCTCTGCCACTGTGCAATCACATGTTCCATTCATATTGCATAGAGCTTTGGTTGAAGGAAAATGACACATGCCCGGTTTGTAGAAATTGTTTATTAGACATATAG 573 0.3805 MSSVSQTFAPQASSDPSLTFSNFIAHAANVILILLLSLFMATILSTIVVLLLLKFCEYISDALLETLDDDIEDGRVRTLVVRSSLTYQGALNQISGSRERLQTFLQAYEMRSFHKRRHSQKLLPPHVIYGQDDEFRSFCSDCVICLENFIIGESCQALPLCNHMFHSYCIELWLKENDTCPVCRNCLLDI* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0997 190 PANTHER RING-H2 FINGER PROTEIN ATL3-LIKE 12 189 - -
Dod10g0997 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 188 IPR013083 -
Dod10g0997 190 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 189 - -
Dod10g0997 190 SMART ring_2 142 183 IPR001841 -
Dod10g0997 190 Pfam Ring finger domain 141 184 IPR001841 -
Dod10g0997 190 SUPERFAMILY RING/U-box 141 188 - -
Dod10g0997 190 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0997 Dod-Chr10 28026996 28027738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0997 12 185 C3H Transcription Factor Family AT1G53010 28.889 5.49e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0997 - - pvu:PHAVU_005G065200g 184.882