Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0972 ATGGAGGCCAAGATGATTGAGAGGAAGAGAACATCAGTAGAGAAGATGAGGAAGGATAGCATCGTTGAAGAAGTGGAAGATGAGATAGAGGAGGAGGATGAAAGTGGTGCTGGTGATGGTGGTCTTGGAGAAGAAGAAAAGAAGAAAGGTGCTGCTGGTGGAAGTGGCAGAAGAGGGTCAAGTGGGGGTGGAGGAGTTTCACCACCTTCCTGTCAGGCAGAGAGGTGTGGTGCTGATTTGACTGACGCAAAGAGGTACCATCGCCGCCACAAGGTATGCGAGTTTCATTCCAAGGCACCTGTGGTGGTTGTTGCGGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTTCATGATCTGGCTGAGTTTGATGAAGCTAAAAGAAGCTGCCGCAGACGCTTGGCCGGACACAACGAGAGGCGCCGGAAAAGCAATGCAGAAACTTGCAATGAGGGAAGCAGCCGCAGCAAAGGGCAACCCCCAAAGGACAGCCTCTGCAGAAATGTTGATGATAGGGGAAGGATTCAGATGAACATGGCAGGGAGCTCTGGTTGCAAGTCTTTCCATATCAGATGA 579 0.5112 MEAKMIERKRTSVEKMRKDSIVEEVEDEIEEEDESGAGDGGLGEEEKKKGAAGGSGRRGSSGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNAETCNEGSSRSKGQPPKDSLCRNVDDRGRIQMNMAGSSGCKSFHIR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0972 192 MobiDBLite consensus disorder prediction 24 39 - -
Dod10g0972 192 MobiDBLite consensus disorder prediction 1 73 - -
Dod10g0972 192 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Dod10g0972 192 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1 192 - -
Dod10g0972 192 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 192 IPR044817 GO:0003677
Dod10g0972 192 Gene3D - 62 132 IPR036893 GO:0003677|GO:0005634
Dod10g0972 192 Pfam SBP domain 71 144 IPR004333 GO:0003677
Dod10g0972 192 MobiDBLite consensus disorder prediction 136 166 - -
Dod10g0972 192 MobiDBLite consensus disorder prediction 1 23 - -
Dod10g0972 192 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0972 Dod-Chr10 27726838 27728179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0972 56 156 SBP-box Gene Family AT1G53160 70.588 4.24e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod10g0972 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0972 - - aprc:113864686 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1239 10 32158946 32161200 Dod10g0972 10 27726838 27728179 ECH
Dod10g0972 10 27726838 27728179 Dod03g0441 03 5396016 5399342 ECH
Dod10g0972 10 27726838 27728179 Dod04g1451 04 36118694 36121062 ECH
Dod10g0972 10 27726838 27728179 Dod10g0972 10 27726838 27728179 ECH