Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0953 ATGGATCAGATGATACCTTCAGAGATGGATCAACAGAGGCAAGGCTATTTTCAGTCTGAACCCCCTATCGTTCAAAGAGGCACCAGCATCTCACAGCTGAGTATCCGCACAGTAGTGGCAGCTCCTGGGAACGCAACTAATCATGATTCCCACTACTTACCACCAGATGCTTATGATAATGCTGGTGTTTATGTGACACAATACAGTGGCATTCAACATCCACATAATCTTAGTATGGGTGTTGCAGCTGCACCGAACTTGTATTATTCTGGCATGAATCCGTTGCCGGGTACCAGTGTATTCCCTATGCCTATAAATCACAGAGCCTCTGATTTGCCAGGTCCAAGCGCATATGCAGTCGCTGTAGGTTCTTCAGATAATTTCGGAAGAAGCAGTAGTTTCATGGATGATGTCAGAGGTCCATACAAAAGGAAAAGTGCTGAAGGGATTAGAGGAAATTACCAATATTTTAATGCTCCAGCTAGTTCTTCTACTGCTCCCCCTAATGCCAGACACCCTGATGGGGTTCCTATGATGGATGCTGCATCATTTTCCCTGCCCGTTCCTCCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCAGGCCAGGTGAATCCATTATGGTGCATGATCATAATCATTTGCTTCGAGGAAACTATTTAGGGCAGCACTTTCAGCCAGCTCCTCCTCCCTGGTTGGACCAGCAGTTGAATAGTAATAACAATGATGGCCACACAACAGCATGGACTCAGTCTGTTCCAGTGCCTTATATACAAGCTCCCAGTGTTAATGGAAGTTCAATAGAGAGTGCAAGTATGGGTTTACCAAGGTATCATGAAACAGCTGGCAACAGAAATGGCCTCATGTTTCCTCCTCCCCCTCCTGTCAACCACCAGCACCATAATTATCATCATTCTGCACTGCCTATGCAAGGAGTAAGAGGTCATGGTGTCAATCTTCACCCTCCAGTAGCTGCAGCTTCATTCAGAGTTCCAACAAATCCTCCACGCAGTGCTTCGATCCCCACACATAATGGTTTTGAGATGGGTCCTAGGCATGCTGGCCCTGTGCCGTCAGCAGGCGTACGGATTTACCGACCTCATAGGGGAGTCATGCATGAGACAGCTATTGGTCACCGAAATCTTCCCCATCTTGGCTTTTTCCATGTTGATGACGTTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATTGGCAGTGTAAGCACAGGTTTGTCGGAGGAAACAATCGCAGCTCAATTGAAAACAAAAACATATTTGAAGACTGCTACTGCTACCAATTCAGAGGAGGCAGCCTCTGACGACCGGGAAGCTGATTCTTGCATTATATGTCAAGATGAATATAAGTGCCAAGAGAAGATTGGAGTTCTTCGATGCGAGCATGAATACCATGCGGATTGCTTGAAGAAATGGTTGCTTGTCAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGCAGGAAGGATGCATAG 1575 0.4616 MDQMIPSEMDQQRQGYFQSEPPIVQRGTSISQLSIRTVVAAPGNATNHDSHYLPPDAYDNAGVYVTQYSGIQHPHNLSMGVAAAPNLYYSGMNPLPGTSVFPMPINHRASDLPGPSAYAVAVGSSDNFGRSSSFMDDVRGPYKRKSAEGIRGNYQYFNAPASSSTAPPNARHPDGVPMMDAASFSLPVPPLVEVGPHGSAWSRPGESIMVHDHNHLLRGNYLGQHFQPAPPPWLDQQLNSNNNDGHTTAWTQSVPVPYIQAPSVNGSSIESASMGLPRYHETAGNRNGLMFPPPPPVNHQHHNYHHSALPMQGVRGHGVNLHPPVAAASFRVPTNPPRSASIPTHNGFEMGPRHAGPVPSAGVRIYRPHRGVMHETAIGHRNLPHLGFFHVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGSVSTGLSEETIAAQLKTKTYLKTATATNSEEAASDDREADSCIICQDEYKCQEKIGVLRCEHEYHADCLKKWLLVKNVCPICKSEALTPGRKDA* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0953 524 SMART ring_2 472 512 IPR001841 -
Dod10g0953 524 Pfam RING-H2 zinc finger domain 470 513 IPR024766 GO:0008270
Dod10g0953 524 ProSiteProfiles Zinc finger RING-type profile. 472 513 IPR001841 -
Dod10g0953 524 SUPERFAMILY RING/U-box 465 517 - -
Dod10g0953 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 517 IPR013083 -
Dod10g0953 524 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 521 - -
Dod10g0953 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 521 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0953 Dod-Chr10 27489446 27493377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0953 389 517 C3H Transcription Factor Family AT2G15530 47.287 9.73e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0953 K19041 - gmx:100800642 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0953 10 27489446 27493377 Dod10g0953 10 27489446 27493377 ECH