Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0947 ATGACTCCAGTTCTATCTCTAGCTGATGCAACTCCAAATTGGGGAACTTCAAAATGGCCCTTCTTTGTACAAACCAAACCCATTCAACTTAACCAGATGAAAGCAATAGCTGCCATTGTTCAATCTTGGGATTGGTACAATGTTAACATCATATATGAAGATAAGGATGCTTTATCCACACAAGCCTTGTCTCATCTTTATAGAGCCCTAAACAAAGCAGGTATAGAAGTAAGCAAGGTTTTAGCCATCCCTCCTTTTGTTCCCTCTTCACTATTGTCCCAAAAACTAGAGAATCTTAGAGAGGAGCAATGTAGAGTCTTTGTTGTGAACTTATCCCTCCATTTGGCCATAAACCTGTTTGAAACTGCAAGTGAAATGGGCATGATGGAGAAAGATTACGTGTGGATCATTGCTGACCCTTTAACAAGTCTTATCCATTCCCTGAATGCATCTACTCTCTCCTCAATGCAAGGGATCATTGGAGTCAAGAGCTACTTCCCTGAAATAGGACACCAGTATGAGGACTTCTCCCATAAATTTCGCCAAAACTTTAGCTCAGAGAACCCTTTGCAATTCAACAATAATGAGCCTGGGATATTTGCAGCACTTGCCTATGATGCTGCATGGACTGTGGCTCAAGCCATGAGTCAAACCAAAAGGACAGGAGGCAAGGTTTTGCTAGATAAGATTTTGCTTAACAATTTCACTGGCTTGAGTGGTAGAATTCAGTTCATTGACCAAAGGTTAGAACCTTCACATACTTTTCAAATCATCAATGTGATAGGGAAGGGTTACAAGCAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAATATTATTGGCCAAAATGCAAGCTACAATTCTTCAGTGAAGATACTTGGACAAGTTTTGTGGCCTGGAAGACCTTTGCACACTCCAAGAGGTTGGACCCTGCCAACAACCGATAAACCACTAAGAGTTGGGGTCCCCACTTTGGCCGCATTGAAACAATTTATAAATATAGTTCACGATCCATCTGAAAATATTACATCCTTTGAAGGATTTACAATTGATCTTTTTAAATCAGCTATGGAGTTGTTGCCTTACCATTTGCCATACACCTTCCATGCTTTCAATGATACATATGATAATTTGGCGAAGCAGATTTATTTGAAGAATTTCGATGCAGTAATTGATGTAGCAATAATCTCATATCGTTATCAATATGCTGAATTCACACAACCATACACTGATCCAGGAGTGATGGTGGTAGCTCCTATAAAATCAAAATCAGAGCACAGAGCTTGGTTATTTGTGAAGCCTTTTACAAGTACCATGTGGGTTCTGATAGTGGTCATGACCATCTACAATGGGTTTGTCCTATGGATGTTAGAAAGGCACCGTTACACTGAACTGAATGGTTCCACGTTGAACCAAACTGGGACAATGGCATGGTTGGCATTGTCCCCTCTCCTCAACTTGACTGGGGATAAGTTACACAACAATTTATCTAGGATAGCTATGGTGGTGTGGCTATTTGTGGCACTTATCATAACACAGACTTACACAGCAAACCTTGCCAGCATGCTAACTGTTGAAAGACTTGAACCAACGGTGGATGATGTTGATCAACTACGGAATAGCAATGTTAAGGTTGGATACACTGCAGGATCCTTCATGAAAAGGTATCTGCAGGAAGTGCTACACTTCTACCCCACAAATATAATGCCATTTTCCTCGCTTGAAGAGTATGCTGATGCTTTCAGAAGGAAAGAAATAGGAGCTGCCTTTATTGAAATACCTGGGGCCAAGGTTTTCCTTGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTATGTATAAAATGGGAGGATATGGATTTGCATTTCCAAGAGGGTCTCCATTTCTTACAAGTGTAAACAAAGCACTGCTAGATTTGTCTGAAATTGGAAGGGTACTTGAGCTAGAGAACAGGATGCTTGCATCAGAGGAATGTTTGGACATAGAAACAGATGGAGAAACTGTTAGTCTTAGCCTCAGCAGCTTTTGGGCCCTCTTCACATTGACTGCAGGCACATCAACCTTTGCTCTCTTGTTTTACACTATTCGTATGTGTTACTCAAATAGCGATCAGAGAACAATGTGGAGACTAATGTTGATGATCATTCAACAATGGGGGTGTGCTAAGAGAAGAATATCAAGAAGAGCTAGTGATGTTGCAGAGAGTCCTATGAACTCTCCAAATACACAAGATATGCTAGCACCTGTTTAA 2256 0.4082 MTPVLSLADATPNWGTSKWPFFVQTKPIQLNQMKAIAAIVQSWDWYNVNIIYEDKDALSTQALSHLYRALNKAGIEVSKVLAIPPFVPSSLLSQKLENLREEQCRVFVVNLSLHLAINLFETASEMGMMEKDYVWIIADPLTSLIHSLNASTLSSMQGIIGVKSYFPEIGHQYEDFSHKFRQNFSSENPLQFNNNEPGIFAALAYDAAWTVAQAMSQTKRTGGKVLLDKILLNNFTGLSGRIQFIDQRLEPSHTFQIINVIGKGYKQIGFWSDGLGFSNIIGQNASYNSSVKILGQVLWPGRPLHTPRGWTLPTTDKPLRVGVPTLAALKQFINIVHDPSENITSFEGFTIDLFKSAMELLPYHLPYTFHAFNDTYDNLAKQIYLKNFDAVIDVAIISYRYQYAEFTQPYTDPGVMVVAPIKSKSEHRAWLFVKPFTSTMWVLIVVMTIYNGFVLWMLERHRYTELNGSTLNQTGTMAWLALSPLLNLTGDKLHNNLSRIAMVVWLFVALIITQTYTANLASMLTVERLEPTVDDVDQLRNSNVKVGYTAGSFMKRYLQEVLHFYPTNIMPFSSLEEYADAFRRKEIGAAFIEIPGAKVFLAKYCKEFIQAGPMYKMGGYGFAFPRGSPFLTSVNKALLDLSEIGRVLELENRMLASEECLDIETDGETVSLSLSSFWALFTLTAGTSTFALLFYTIRMCYSNSDQRTMWRLMLMIIQQWGCAKRRISRRASDVAESPMNSPNTQDMLAPV* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0947 751 Gene3D - 30 190 - -
Dod10g0947 751 SMART GluR_14 320 657 IPR001320 GO:0015276|GO:0016020
Dod10g0947 751 SUPERFAMILY Periplasmic binding protein-like I 2 310 IPR028082 -
Dod10g0947 751 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 743 - -
Dod10g0947 751 Pfam Ligand-gated ion channel 654 686 IPR001320 GO:0015276|GO:0016020
Dod10g0947 751 Pfam Bacterial extracellular solute-binding proteins, family 3 345 653 IPR001638 -
Dod10g0947 751 Gene3D - 202 318 - -
Dod10g0947 751 Gene3D - 429 563 - -
Dod10g0947 751 Gene3D - 319 428 - -
Dod10g0947 751 CDD GluR_Plant 317 655 - -
Dod10g0947 751 Pfam Receptor family ligand binding region 17 261 IPR001828 -
Dod10g0947 751 SUPERFAMILY Periplasmic binding protein-like II 293 652 - -
Dod10g0947 751 PANTHER GLUTAMATE RECEPTOR 2 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0947 Dod-Chr10 27445884 27450311 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0947 3 750 Ion Channels AT2G29110 32.653 1.11e-130 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0947 - - gmx:100799573 1115.52