Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0944 ATGAACATGATAGAGAAAGATTATGTGTGGATCATTACTGATCCCTTTACAAGTCTTGTACATTCCTTGGATGCATCCACTCTCTCCTCAATGCAAGGGATCATAGGAGTTAAGAGCTATTTCCCTCAAATGGGGCACAAATATGAGGAGTTCTACCATAAATTTCGCCAAAAATTTAGCTCAGAGTACCCTCAGGAATTCAACAATGAGCCTGGGATATTTGCAGCCTATGCCTTTGATGCTGCATGGACTGTGGCTGTAGCCATGAGCCAAACCAACAATGAAGGGGGCCAACTTTGGCTAGATAAGATTTTGCTCAATAATTTTACTGTTTTAAAGGGAAGAATTCAATTCACTGGCCATAAGTTAGCTCCTGCACACACTTTTCAGATTATAAATGTGATAGGGAATGGTTACAAGGAAATTGGTTTCTGGTCAGATGGATTAGGCTTTTCAAACTGTACTGGCCAAAATGCTACTTACAATTCTTCAATGAAGGAACTTGGACAAGTTATGTGGCCAGGTAGACCTTGGGACATTCCAAGAGGATGGGCCTTGCAAACAATTGACAAGCCACTAAGAGTTGGGGTCCCTGCATTGGTCACATTGAAACAATTTATAAATATAACAAAAGATCAATCTGACAATACTACCTCCTTTCAGGGATTCACTATTGATCTTTTCAGAGCAACTATGAAGTTGTTGCCCTACCATTTGCCATACAAATTCTATGCTTTCAATGATACATATGATGAGCTGGTGAAGCAGATTTATTTGAAGAATTTCGATGCAGTAATTGATGCAGGAATAATTTCATATCGATATCAGTATGCTGAATTCACTCAGCCCTACACTGATCCTGGGGTGGTGATGGTAGTCCCACTTAGATCAAAAACTGGACTTAGAGCTTGGCTATTTGTGAAGCCTTTTACAAAGACCATGTGGATTCTAATAATGGCTGTGATTATCTACAATGGCTTTGTTTTATGGATGTTAGAAAGAAAACATTTCCCTGAACTTAAGGGCTCCATGCTGAATCAAACTGGAACCATGGCATGGTTGGCATTGACCCCTCTCATCAACTTGAATGGGGATAAATTACACAGCAATTTATCAAGGATGGCTATGGTGGTGTGGCTTTTTGTGGCACTCATCATAACACAGACTTACACAGCTAACCTTACCAGCATGCTAACTGTTGAACGGTTTGAACCAACGGTAAATGATGTTGATCAGCTAAGGAATAGCAATGCCATGGTTGGATACAGCACTGGATCCTTCTTGAAAAATTATCTGCATGATGTGTTACACTTCCATCCTGCAAACATCAGGCAATTCAGCTCACTTGAAGAGTTTGCTGAAGCTCTCAGAAGGAAAGAAATAGGAGCTGCCTTTCTTGAAGTTCCTGGGTCCAAGATTTTCCTTGCAAAATACTGTAAAGAGTTTACTCAAGCAGGGCCTATGTATAAAATTGGAGGCTTTGGTTTTGCATTCCCAACAGGATCTCCATATCTTCCTGGAGTAAACAAAGCACTGCTAGATTTATTTGAAACCGGAAAGCTGCGCGAATTAGAGAACAGAATGCTCGCAGCAGAGAAATGTGAAGAATCACAACCAGATGGAGATACTACAAGTCTTAGCCCCAACTGCTTCTGGGCCCTCTTCACATTGACAGCAGGAACTTCAACAGTTGCTCTCTTGCTTTATGTCATTGGCATGAAGTATTCACACCTTGAGAAAAGAACAATGTGGAGACTAATGATGGTGATGATTCAACAATGGGGACATGCAAAGAGACAAGTGTCAAGAAAAATAAGTAATGTTGCAGCAAGTCCTGAGAACTCTCGCAATACACACCCCATGCCAACTGATGTTTAA 1878 0.4079 MNMIEKDYVWIITDPFTSLVHSLDASTLSSMQGIIGVKSYFPQMGHKYEEFYHKFRQKFSSEYPQEFNNEPGIFAAYAFDAAWTVAVAMSQTNNEGGQLWLDKILLNNFTVLKGRIQFTGHKLAPAHTFQIINVIGNGYKEIGFWSDGLGFSNCTGQNATYNSSMKELGQVMWPGRPWDIPRGWALQTIDKPLRVGVPALVTLKQFINITKDQSDNTTSFQGFTIDLFRATMKLLPYHLPYKFYAFNDTYDELVKQIYLKNFDAVIDAGIISYRYQYAEFTQPYTDPGVVMVVPLRSKTGLRAWLFVKPFTKTMWILIMAVIIYNGFVLWMLERKHFPELKGSMLNQTGTMAWLALTPLINLNGDKLHSNLSRMAMVVWLFVALIITQTYTANLTSMLTVERFEPTVNDVDQLRNSNAMVGYSTGSFLKNYLHDVLHFHPANIRQFSSLEEFAEALRRKEIGAAFLEVPGSKIFLAKYCKEFTQAGPMYKIGGFGFAFPTGSPYLPGVNKALLDLFETGKLRELENRMLAAEKCEESQPDGDTTSLSPNCFWALFTLTAGTSTVALLLYVIGMKYSHLEKRTMWRLMMVMIQQWGHAKRQVSRKISNVAASPENSRNTHPMPTDV* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0944 625 Gene3D - 80 191 - -
Dod10g0944 625 PANTHER GLUTAMATE RECEPTOR 1 618 - -
Dod10g0944 625 CDD GluR_Plant 191 529 - -
Dod10g0944 625 SUPERFAMILY Periplasmic binding protein-like II 171 527 - -
Dod10g0944 625 Gene3D - 304 434 - -
Dod10g0944 625 SUPERFAMILY Periplasmic binding protein-like I 1 184 IPR028082 -
Dod10g0944 625 Pfam Ligand-gated ion channel 528 560 IPR001320 GO:0015276|GO:0016020
Dod10g0944 625 Gene3D - 492 527 - -
Dod10g0944 625 Gene3D - 1 70 - -
Dod10g0944 625 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 618 - -
Dod10g0944 625 Gene3D - 462 491 - -
Dod10g0944 625 Gene3D - 192 303 - -
Dod10g0944 625 SMART GluR_14 192 531 IPR001320 GO:0015276|GO:0016020
Dod10g0944 625 MobiDBLite consensus disorder prediction 605 625 - -
Dod10g0944 625 Pfam Receptor family ligand binding region 1 136 IPR001828 -
Dod10g0944 625 Pfam Bacterial extracellular solute-binding proteins, family 3 215 527 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0944 Dod-Chr10 27350760 27353600 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0944 1 575 Ion Channels AT5G11210 32.795 8.08e-106 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0944 - - gmx:100799573 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0944 10 27350760 27353600 Dod10g0944 10 27350760 27353600 ECH