Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0941 ATGGCGAAAACGAGGCCAGGCAAAAGAGACTTGGACTCATACACCATCAGAGGCACTAACAAGATCGTAAGAGTTGGTGACTGTGTTCTGATGCGTCCTTCGGACACGTCGAAGCCACCGTATGTGGCGCGCGTGGAGAAGATCGAGAGTGATAGCCGGAACAACGTGAGGGTGCGTGTGAGGTGGTACTACAGGCCTGAAGAGTCCATTGGTGGAAGGAGGCAGTTCCATGGGGCAAAGGAGCTCTTCTTGTCCGATCACTATGACATTCAGAGTGCTCACACCATTGAAGGGAAGTGTATTGTTCATTCCTTCAAGAACTACACTAAGCTTGAGAATGTGGGTACTGAGGATTATTACTGTAGGTTTGAGTACAAGGCTGCCACTGGGGCTTTCACACCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCTTATAACCCGGATGACCTCATGGTGCAGTGTGAGGGTTGCAAGGATTGGTACCATCCTGCATGCGTTGGAATGACTATTGAAGAAGCTAAGAAATTGGAGCATTTTGTATGTTCTGAATGTTCGTCTGATGATGACTTGAAGAAACCTCAGGCTACATTTCCCGTGTCACCAGTATCTGATGGCAAGGTTAGACTGCCTGCATCTAGTTCCAAATAA 654 0.4817 MAKTRPGKRDLDSYTIRGTNKIVRVGDCVLMRPSDTSKPPYVARVEKIESDSRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCIVHSFKNYTKLENVGTEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDDDLKKPQATFPVSPVSDGKVRLPASSSK* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0941 217 Pfam PHD-finger 140 188 IPR019787 -
Dod10g0941 217 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Dod10g0941 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 199 IPR013083 -
Dod10g0941 217 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Dod10g0941 217 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Dod10g0941 217 PANTHER BNAC03G64850D PROTEIN 3 213 IPR045205 GO:0006325|GO:0035064
Dod10g0941 217 PANTHER OS08G0421900 PROTEIN 3 213 - -
Dod10g0941 217 SMART PHD_3 140 187 IPR001965 -
Dod10g0941 217 Gene3D - 2 132 IPR043151 -
Dod10g0941 217 CDD BAH_BAHCC1 22 156 - -
Dod10g0941 217 Pfam BAH domain 23 135 IPR001025 GO:0003682
Dod10g0941 217 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Dod10g0941 217 SMART BAH_4 21 136 IPR001025 GO:0003682
Dod10g0941 217 MobiDBLite consensus disorder prediction 187 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0941 Dod-Chr10 27316230 27320885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0941 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 2.03e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod10g0941 BAH 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0941 K25868 - gmx:100800993 414.846