LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g0921	ATGCAGAGCCTGAAGTTGAGGGTGACGAACTTAGATGAAGATGATGATGAGTTCATGAAGAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTATAGTTGACCATTCGAAAATTGACTATCAACCTTTCAAGAAAAACTTTTACATTGAAGTGAAGGAGATCTCAAGGATGACACCTGAAGAAGTTGCTGCATACCGGAAGCAGTTGGAGTTAAAGATACATGGAAAGGATGTTCCAAAGCCTGTGAAAACATGGAATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTCAACTATGAAAAGCCGATGCCTATTCAAGCTCAGGCGCTGCCTGTGATAATGAATGGTCGAGACTGCATAGGCGTTGCAAAAACTGGATCAGGCAAAACACTTGCTTTTGTTCTGCCTATGTTGAGGCACATCAAAGATCAGCCGCCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAGCTTGTACAGCAGATTTACAGTGATATAAAGAAGTTTGGAAAGGTAATGGGTGTCAGGTGTGTACCTGTCTATGGAGGTTCTGGAGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATATTGTGCACCAGTAGTGGCAAAATAACTAACCTGCGCAGAGTTACTTATCTGGTCATGGATGAGGCTGACAGAATGTTTGACATGGGCTTTGAGCCCCAAATCACAAGAATTGTTCAGAATATTCGACCGGATCGTCAAACTGTTCTCTTTTCTGCCACTTTCCCTCGTCAGGTTGAAATTCTGGCTCGTAAGGTTCTCAATAAACCTGTTGAAATACAAGTTGGTGGCAGGAGTGTTGTTAACAAGGACATAGCACAGCTGGTTGAGGTGAGACCAGAGAATGAGAGGTTCTTGAGGCTGTTAGAGATATTGGGGGAATGGTATGAGAAGGGAAAGATTCTGATATTTGTCCACTCACAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTCAGGCATGGTTATCCTTGCCTCTCTCTTCATGGAGCTAAGGACCAGACCGACCGTGAATCCACAATTGCTGATTTCAAAAGCAATGTCTGCAATTTGTTAGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTTGAGTTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGCCGCACTGGCCGAGCTGGCCGAAAGGGCTGTGCTATTACTTTTATTTCAGTGGAAGAAGCAAGATATGCACCAGATCTAGCAAAAGCCTTGGAGCTATCTGAGCAAGTTGTTCCTAATGATTTGAAGGCTCTTGCTGATGGCTTTATGGCAAAAGTGAATCAAGGACTTGAGCAGGCTCACGGGACTGGTTATGGAGGCAGTGGCTTCAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCGGTAAAGAAAGCGCAAGCCAAGGAGTATGGGTTTGAAGAGGACAAATCAGATTCTGATGATGAAGATGAAAGCATTAGGAAGGCAGGTGGAGATATCTCACAGCATCCTGCTCTTGCTCATATTCTTGCGGCCTCGAAAGCAACTGCGCCTGCAGTATCTAGTCCCATCTCTGCTGCCCAGCTAATTTCTAATGGTGGACTACCTGTTTCGTTGCCCTCTGTTCTTGGTCTCCAGACTGCCACTGTCTTGCCTGGTACAGGGCTTCCCCTTGCTGCAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATAAACCTGCAGCACAACTTAGCTAAGATACAATCTGAGGCATTGCCTGAGCATTATGAAGCTGAACTAGAGATAAATGATTTTCCCCAAAATGCTCGGTGGAAAGTAACCCACAAGGAAACTTTGGGTCCAATTTCTGACTGGACAGGAGCTGCTATTACCACCAGAGGGCAATATTTCCCACCTGGTAAACTCACAGGACCTGGGGAACGCAAACTCTACTTATTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCTAAGGCAGAGTTGAAGCGTGTGTTGGAAGACATTACAAATCAGGCTTTGCAACTTCCTGGTGGATCTCAACCAGGCAAATACTCTGTTGTTTAA	2166	0.4464	MQSLKLRVTNLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFKKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPVKTWNQTGLTSKILETIRKLNYEKPMPIQAQALPVIMNGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIYSDIKKFGKVMGVRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTIADFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISVEEARYAPDLAKALELSEQVVPNDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAVKKAQAKEYGFEEDKSDSDDEDESIRKAGGDISQHPALAHILAASKATAPAVSSPISAAQLISNGGLPVSLPSVLGLQTATVLPGTGLPLAANDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQYFPPGKLTGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGSQPGKYSVV*	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g0921	721	CDD	DEADc_DDX46	72	293	-	-
	Dod10g0921	721	Pfam	Helicase conserved C-terminal domain	317	425	IPR001650	-
	Dod10g0921	721	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	238	246	IPR000629	-
	Dod10g0921	721	Pfam	DEAD/DEAH box helicase	108	279	IPR011545	GO:0003676\|GO:0005524
	Dod10g0921	721	Gene3D	-	35	292	IPR027417	-
	Dod10g0921	721	PANTHER	LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE	32	541	-	-
	Dod10g0921	721	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	83	111	IPR014014	GO:0003724
	Dod10g0921	721	Coils	Coil	685	708	-	-
	Dod10g0921	721	Gene3D	-	293	467	IPR027417	-
	Dod10g0921	721	SMART	helicmild6	344	425	IPR001650	-
	Dod10g0921	721	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	66	295	IPR027417	-
	Dod10g0921	721	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	32	541	-	-
	Dod10g0921	721	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	230	464	IPR027417	-
	Dod10g0921	721	SMART	ultradead3	102	307	IPR014001	-
	Dod10g0921	721	CDD	SF2_C_DEAD	304	434	-	-
	Dod10g0921	721	MobiDBLite	consensus disorder prediction	504	528	-	-
	Dod10g0921	721	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	320	464	IPR001650	-
	Dod10g0921	721	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	114	292	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g0921	Dod-Chr10	27088653	27095719	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g0921	70	447	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.937	2.02e-62	213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g0921	K12811		-	zju:107413866	1268.83