Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0903 ATGTCTCTCAGGAAGGTTTTTCGCTCGCGCAAGTTCTCCAGGTCGTTCAAGGAGGTCGGCGGTGTAGCCGCCGTCGGCCTCGACGGCGACAGCCGTGGCGGCGGCGGAGGAGTATCGGCGGCGGATCGAGGGGAGGATGGCAGGAATGCGTGGTCGGGGATGTTGCCGGAGCTGCTGGGGGAGATCATAAGGAGGGTGGACGCGGAGGAGGAGCAGTGGCCGCAGAGGCAGAACGTGGTGGCGTGCGCCTGCGTCTGCAAGCGGTGGAGGGACATCACGCGCGAGATCGTGAGGTCTCCCTCTCACAACGGCAAGATCACCTTCCCTTCATGCCTCAAGAAGCCAGGTCCACGTGACCTTCCCCACCAATGTCTTATAAAGCGGAATAAAAAGACCTCAACATTTTACCTCTATCTTGCCCTTACACCATCATTCGCAGATAAAGGGAAGTTTTTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCACTCGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAATTTCACAATCTATGACAGCCAGCCACCCCATAGCGGTGCAAAACCATCTAGTGGCAGGGCTAGCCGCCGTTTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTAAAATCGAGAGGGCCAAGGAGGATGGTCTGCTCACTGAAGTGTCATGTCTCACCATTGGAAGAAAGTTCAGATAGCACATCTCTGGACGGCCTAAAGGTGCACAGTAAGGAACATGCCGCCTCTGGCTACACAATCTTGAAGAACAAAGCACCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTTCATGGTCGTGTGACAGTAGCATCAGTGAAGAACTTTCAGCTGGTCGCAACAGTGGACCAAAGTCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGGAAAAGTAGGAGATGATACTTTTACCATGGATTATAGGCAGCCTTTATCTGCCTTCCAGGCATTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTGGCATGTGAGTAA 1143 0.5162 MSLRKVFRSRKFSRSFKEVGGVAAVGLDGDSRGGGGGVSAADRGEDGRNAWSGMLPELLGEIIRRVDAEEEQWPQRQNVVACACVCKRWRDITREIVRSPSHNGKITFPSCLKKPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFADKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCHVSPLEESSDSTSLDGLKVHSKEHAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0903 380 PANTHER TUBBY-RELATED 1 380 - -
Dod10g0903 380 ProSitePatterns Tub family signature 1. 308 321 IPR018066 -
Dod10g0903 380 Pfam Tub family 112 375 IPR000007 -
Dod10g0903 380 ProSitePatterns Tub family signature 2. 365 380 IPR018066 -
Dod10g0903 380 Pfam F-box domain 52 98 IPR001810 GO:0005515
Dod10g0903 380 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Dod10g0903 380 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Dod10g0903 380 PRINTS Tubby superfamily signature 308 324 IPR000007 -
Dod10g0903 380 PRINTS Tubby superfamily signature 358 380 IPR000007 -
Dod10g0903 380 PRINTS Tubby superfamily signature 290 307 IPR000007 -
Dod10g0903 380 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Dod10g0903 380 PRINTS Tubby superfamily signature 337 356 IPR000007 -
Dod10g0903 380 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 380 - -
Dod10g0903 380 SUPERFAMILY Tubby C-terminal domain-like 100 380 IPR025659 -
Dod10g0903 380 SUPERFAMILY F-box domain 45 94 IPR036047 GO:0005515
Dod10g0903 380 Gene3D Tubby Protein; Chain A 107 380 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0903 Dod-Chr10 26783236 26788516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0903 1 380 TUB Transcription Factor Family AT1G53320 72.021 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dod10g0903 Tub 2.3e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0903 K19600 - gmx:100801919 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0903 10 26783236 26788516 Dod10g0903 10 26783236 26788516 ECH